Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   J0W34_RS02330 Genome accession   NZ_CP071321
Coordinates   499017..500429 (-) Length   470 a.a.
NCBI ID   WP_230970537.1    Uniprot ID   -
Organism   Nitrogeniibacter aestuarii strain H1-1-2A     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 494017..505429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0W34_RS02295 - 494052..494804 (+) 753 WP_230970534.1 pteridine reductase -
  J0W34_RS02300 ttcA 494877..495782 (+) 906 WP_407941165.1 tRNA 2-thiocytidine(32) synthetase TtcA -
  J0W34_RS02305 - 495889..496758 (+) 870 WP_227815405.1 FHA domain-containing protein -
  J0W34_RS02310 - 496812..497045 (-) 234 WP_230970536.1 PsiF family protein -
  J0W34_RS02315 hprK 497169..498107 (-) 939 WP_227815407.1 HPr(Ser) kinase/phosphatase -
  J0W34_RS02320 ptsN 498076..498561 (-) 486 WP_227815408.1 PTS IIA-like nitrogen regulatory protein PtsN -
  J0W34_RS02325 hpf 498679..499002 (-) 324 WP_227815409.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  J0W34_RS02330 rpoN/rpoN1 499017..500429 (-) 1413 WP_230970537.1 RNA polymerase factor sigma-54 Machinery gene
  J0W34_RS02335 lptB 500444..501166 (-) 723 WP_230970538.1 LPS export ABC transporter ATP-binding protein -
  J0W34_RS02340 recX 501153..501599 (-) 447 WP_227815412.1 recombination regulator RecX -
  J0W34_RS02345 recA 501610..502653 (-) 1044 WP_227815413.1 recombinase RecA Machinery gene
  J0W34_RS02350 - 502749..503234 (-) 486 WP_230970539.1 CinA family protein -
  J0W34_RS02355 - 503244..503729 (-) 486 WP_230970540.1 phosphatidylglycerophosphatase A -
  J0W34_RS02360 thiL 503759..504727 (-) 969 WP_230970541.1 thiamine-phosphate kinase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 52877.55 Da        Isoelectric Point: 4.8141

>NTDB_id=544997 J0W34_RS02330 WP_230970537.1 499017..500429(-) (rpoN/rpoN1) [Nitrogeniibacter aestuarii strain H1-1-2A]
MKPTLQLKLSQHLTLTPQLQQSIKLLQLSTIELNQEIEKALLDNPLLEREEGPGPESGSEGDGEGERNESESTESQSNEV
LDAMSDWASSSSGSSSNRDDDDDSDFQSFHAAQVSLREHLDQQIALTPMSDRDRSLVRLLMEALDDDGYLTQSLDDILEM
FDPENEVEIEDLQIALHHLQHLDPPGVGARSPSECLALQLRSLPESPTRDLAMRIVVEHLELLAQRDFVRLRRNLQCSED
SLREAHHLICSLSPRPCAEFALNDTRYVIPDVVVRKVRGRWTAALNPEAMPKLKVNALYAQLLQQNRGNNGDLGGQLQEA
KWLIKNVQQRFDTILRVAQSIVDQQRQFFDYGEVAMRPLTLREIAEELELHESTISRVTTQKYMSTPRGVLEFKYFFGSH
VATDTGGAASSTAIRALIRQLVEAEDRKKPLSDSKIADLLGQQGMVVARRTVAKYRESLNIPPVSKRKTI

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=544997 J0W34_RS02330 WP_230970537.1 499017..500429(-) (rpoN/rpoN1) [Nitrogeniibacter aestuarii strain H1-1-2A]
ATGAAACCCACACTTCAACTCAAACTCTCGCAGCACCTCACGCTGACGCCACAACTGCAGCAGTCCATCAAACTGCTCCA
GCTGTCGACGATCGAGTTGAATCAGGAAATCGAGAAGGCACTGCTCGACAACCCGCTGCTTGAGCGTGAAGAGGGCCCCG
GCCCCGAAAGCGGCAGTGAGGGCGATGGCGAAGGCGAGCGCAACGAAAGCGAGAGCACCGAGTCCCAGAGCAACGAAGTG
CTCGACGCGATGTCCGACTGGGCCAGCTCCAGTTCGGGCAGCAGCAGCAACCGGGACGATGACGACGACAGCGACTTTCA
GTCCTTCCACGCCGCCCAGGTATCGCTGCGGGAACACCTCGACCAACAGATTGCACTGACCCCGATGAGCGACCGCGACC
GGTCGCTGGTCCGCCTGCTCATGGAAGCTCTCGACGACGATGGCTACCTGACGCAATCACTCGACGACATTCTGGAGATG
TTCGATCCGGAGAACGAAGTCGAGATCGAAGACCTGCAGATTGCCCTGCACCACCTGCAGCACCTCGACCCCCCGGGCGT
CGGCGCACGCAGCCCGTCCGAATGTCTGGCACTCCAGCTGCGCTCGCTGCCCGAGTCACCCACCCGTGATCTGGCCATGC
GCATCGTTGTCGAGCACCTCGAATTGCTGGCCCAGCGCGACTTTGTCCGCCTCCGCCGTAACCTGCAATGCTCGGAAGAC
AGCCTGCGGGAGGCGCACCACCTCATCTGCAGCCTCAGCCCGCGTCCGTGCGCCGAGTTTGCCCTCAACGACACGCGTTA
CGTCATCCCGGACGTGGTCGTGCGCAAGGTCCGCGGCCGGTGGACGGCCGCGCTCAACCCCGAGGCCATGCCCAAGCTCA
AGGTCAATGCCCTGTATGCGCAATTGCTCCAGCAGAATCGCGGCAACAACGGCGATCTGGGCGGCCAGCTGCAGGAGGCC
AAATGGCTGATCAAGAACGTGCAGCAGCGCTTCGACACCATTTTGCGCGTCGCGCAGTCCATCGTTGACCAACAGCGCCA
GTTCTTCGATTATGGAGAGGTGGCGATGCGCCCCTTGACGCTGCGCGAGATCGCAGAGGAACTGGAGTTGCACGAGTCGA
CGATTTCACGCGTCACCACGCAAAAGTACATGTCCACGCCCCGCGGCGTACTGGAGTTCAAGTATTTCTTTGGCAGCCAT
GTTGCGACCGATACCGGTGGCGCTGCCTCGTCGACCGCCATCCGCGCGTTAATTCGTCAACTTGTGGAGGCTGAAGACCG
TAAAAAACCCTTATCCGATTCCAAAATCGCAGATTTACTTGGCCAGCAGGGCATGGTGGTGGCCCGACGCACGGTTGCCA
AATACCGTGAGTCCCTCAACATCCCGCCGGTCAGCAAACGCAAGACGATCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(316-468)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(106-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

53.493

100

0.57