Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JY500_RS00715 Genome accession   NZ_CP071060
Coordinates   159178..160200 (-) Length   340 a.a.
NCBI ID   WP_172201846.1    Uniprot ID   -
Organism   Niveibacterium microcysteis strain HC41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 154178..165200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JY500_RS00685 (JY500_00685) hprK 154662..155606 (-) 945 WP_172201858.1 HPr(Ser) kinase/phosphatase -
  JY500_RS00690 (JY500_00690) ptsN 155593..156060 (-) 468 WP_172201856.1 PTS IIA-like nitrogen regulatory protein PtsN -
  JY500_RS00695 (JY500_00695) raiA 156178..156501 (-) 324 WP_172201854.1 ribosome-associated translation inhibitor RaiA -
  JY500_RS00700 (JY500_00700) rpoN/rpoN1 156513..157982 (-) 1470 WP_206254724.1 RNA polymerase factor sigma-54 Machinery gene
  JY500_RS00705 (JY500_00705) lptB 157999..158721 (-) 723 WP_206254725.1 LPS export ABC transporter ATP-binding protein -
  JY500_RS00710 (JY500_00710) recX 158708..159157 (-) 450 WP_172201848.1 recombination regulator RecX -
  JY500_RS00715 (JY500_00715) recA 159178..160200 (-) 1023 WP_172201846.1 recombinase RecA Machinery gene
  JY500_RS00720 (JY500_00720) - 160336..160941 (+) 606 WP_206254726.1 LON peptidase substrate-binding domain-containing protein -
  JY500_RS00725 (JY500_00725) mutY 161026..162051 (-) 1026 WP_206254727.1 A/G-specific adenine glycosylase -
  JY500_RS00730 (JY500_00730) - 162048..163112 (-) 1065 WP_206254728.1 VanZ family protein -
  JY500_RS00735 (JY500_00735) - 163239..164804 (-) 1566 WP_172201831.1 sodium:solute symporter family protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36499.81 Da        Isoelectric Point: 5.1661

>NTDB_id=542579 JY500_RS00715 WP_172201846.1 159178..160200(-) (recA) [Niveibacterium microcysteis strain HC41]
MDDNKAKALQAALAQIEKQFGKGSIMRMGDGEVESDIQAVSTGSLGLDIALGIGGLPRGRVIEIYGPESSGKTTLTLQAI
AEMQKMGGVAAFIDAEHALDVSYAQKLGVNVGDLLISQPDTGEQALEIADMLVRSGSVDIVVIDSVAALTPKAEIEGEMG
DQLPGLQARLMSQALRKLTGNIKRTNTMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGTIKKGDEVIGS
ETKVKVVKNKVAPPFKEAHFDILYGEGISREGEIIDMGVEQRFVDKSGAWYAYNGEKIGQGKDNAREFLRSHPETAREIE
NKIRVQLGLPELPAGEAAAA

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=542579 JY500_RS00715 WP_172201846.1 159178..160200(-) (recA) [Niveibacterium microcysteis strain HC41]
ATGGACGACAACAAGGCGAAAGCACTTCAGGCCGCGCTGGCCCAGATCGAAAAACAGTTCGGCAAGGGCTCCATCATGCG
GATGGGCGATGGCGAAGTGGAATCGGACATCCAGGCGGTGTCGACCGGCTCCCTCGGGCTGGACATCGCGCTGGGCATTG
GCGGCCTGCCGCGTGGCCGCGTGATCGAGATCTACGGCCCGGAATCGTCAGGCAAGACGACCCTCACGCTGCAGGCGATT
GCCGAGATGCAGAAGATGGGTGGCGTGGCCGCCTTCATCGACGCCGAACACGCGCTCGACGTGTCCTACGCGCAGAAGCT
GGGCGTCAACGTCGGCGACCTGCTGATCTCGCAGCCGGATACCGGCGAGCAGGCGCTTGAGATCGCCGATATGCTGGTGC
GTTCCGGCAGCGTCGATATCGTCGTGATCGACTCGGTCGCCGCACTGACGCCGAAGGCCGAAATCGAGGGCGAGATGGGC
GATCAACTGCCTGGCCTGCAGGCCCGCCTGATGTCGCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGCACCAACAC
CATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACCCCGAAACCACCACCGGCGGCAATG
CGCTGAAGTTCTACGCCTCGGTGCGTCTGGACATCCGCCGCACCGGCACGATCAAGAAGGGCGACGAAGTCATCGGCTCG
GAGACCAAGGTCAAGGTCGTGAAGAACAAAGTCGCGCCACCGTTCAAGGAAGCGCACTTCGACATCCTTTACGGCGAGGG
CATCTCGCGCGAAGGCGAGATCATCGACATGGGCGTCGAACAGCGCTTTGTCGACAAGTCCGGCGCGTGGTACGCATACA
ACGGCGAGAAGATCGGCCAGGGCAAGGACAACGCGCGCGAATTCCTGCGCTCGCACCCGGAAACCGCACGCGAAATCGAG
AACAAGATCCGCGTACAACTGGGCCTGCCTGAACTGCCGGCTGGGGAAGCCGCCGCGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.445

93.824

0.774
  recA Pseudomonas stutzeri DSM 10701

74.618

96.176

0.718
  recA Acinetobacter baylyi ADP1

73.7

96.176

0.709
  recA Acinetobacter baumannii D1279779

73.394

96.176

0.706
  recA Neisseria gonorrhoeae MS11

72.036

96.765

0.697
  recA Neisseria gonorrhoeae strain FA1090

72.036

96.765

0.697
  recA Neisseria gonorrhoeae MS11

72.036

96.765

0.697
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.695

97.353

0.688
  recA Vibrio cholerae strain A1552

70.695

97.353

0.688
  recA Glaesserella parasuis strain SC1401

71.692

95.588

0.685
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

98.824

0.659
  recA Helicobacter pylori strain NCTC11637

63.953

100

0.647
  recA Helicobacter pylori 26695

63.663

100

0.644
  recA Bacillus subtilis subsp. subtilis str. 168

66.565

96.765

0.644
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.559

97.353

0.638
  recA Latilactobacillus sakei subsp. sakei 23K

63.142

97.353

0.615
  recA Streptococcus mitis SK321

61.357

99.706

0.612
  recA Streptococcus mutans UA159

61.862

97.941

0.606
  recA Streptococcus mitis NCTC 12261

62.006

96.765

0.6
  recA Streptococcus pneumoniae D39

62.006

96.765

0.6
  recA Streptococcus pneumoniae R6

62.006

96.765

0.6
  recA Streptococcus pneumoniae TIGR4

62.006

96.765

0.6
  recA Streptococcus pneumoniae Rx1

62.006

96.765

0.6
  recA Streptococcus pyogenes NZ131

61.818

97.059

0.6
  recA Lactococcus lactis subsp. cremoris KW2

61.774

96.176

0.594
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.062

94.118

0.556