Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   JY500_RS00700 Genome accession   NZ_CP071060
Coordinates   156513..157982 (-) Length   489 a.a.
NCBI ID   WP_206254724.1    Uniprot ID   -
Organism   Niveibacterium microcysteis strain HC41     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 151513..162982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JY500_RS00670 (JY500_00670) - 151828..153654 (-) 1827 WP_206254721.1 protein-disulfide reductase DsbD -
  JY500_RS00675 (JY500_00675) cutA 153666..154013 (-) 348 WP_206254722.1 divalent-cation tolerance protein CutA -
  JY500_RS22360 (JY500_00680) - 154126..154590 (-) 465 WP_206254723.1 PsiF family protein -
  JY500_RS00685 (JY500_00685) hprK 154662..155606 (-) 945 WP_172201858.1 HPr(Ser) kinase/phosphatase -
  JY500_RS00690 (JY500_00690) ptsN 155593..156060 (-) 468 WP_172201856.1 PTS IIA-like nitrogen regulatory protein PtsN -
  JY500_RS00695 (JY500_00695) raiA 156178..156501 (-) 324 WP_172201854.1 ribosome-associated translation inhibitor RaiA -
  JY500_RS00700 (JY500_00700) rpoN/rpoN1 156513..157982 (-) 1470 WP_206254724.1 RNA polymerase factor sigma-54 Machinery gene
  JY500_RS00705 (JY500_00705) lptB 157999..158721 (-) 723 WP_206254725.1 LPS export ABC transporter ATP-binding protein -
  JY500_RS00710 (JY500_00710) recX 158708..159157 (-) 450 WP_172201848.1 recombination regulator RecX -
  JY500_RS00715 (JY500_00715) recA 159178..160200 (-) 1023 WP_172201846.1 recombinase RecA Machinery gene
  JY500_RS00720 (JY500_00720) - 160336..160941 (+) 606 WP_206254726.1 LON peptidase substrate-binding domain-containing protein -
  JY500_RS00725 (JY500_00725) mutY 161026..162051 (-) 1026 WP_206254727.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 489 a.a.        Molecular weight: 54497.51 Da        Isoelectric Point: 4.5972

>NTDB_id=542578 JY500_RS00700 WP_206254724.1 156513..157982(-) (rpoN/rpoN1) [Niveibacterium microcysteis strain HC41]
MKPSLQLRISQQLALTPQLQQSIKLLQLSTLELNSEIERMLLENPLLEREDAESDPEAWGQSATTPSGDERTDTANDAAA
EAAETSPEPSEPSFDDAGSYDDGPTEWSGEGGGSGNRDDDDETDFQEFRAAQTSLRDHLDEQVALMPLSDRDRALLRFMI
EALDDDGYLTQPLDELLELLPPEFEVDVDELQIALAHLQNLDPPGIGARSPGECLKLQLRLLPESAAREAAIIIVEQHLE
LLAARDFVRLKRHLGCSDETLREAHQLVCSLDPRPGARFAAIETRYVIPDVIVRKVRGHWSATLNPDAMPKLRINQLYAG
ILQQNRGSAGSLAGQLQEARWMIKNVQQRFDTILRVSQAIVDRQRQFFDYGDVAMRPLTLREIAEQLDLHESTISRVTTQ
KYMATPRGILELKYFFGSHVATDSGGACSATAIRALIRQLVAAEDRKKPLSDARIAELLGQQGIVVARRTIAKYRESLNI
PPVSQRKMI

Nucleotide


Download         Length: 1470 bp        

>NTDB_id=542578 JY500_RS00700 WP_206254724.1 156513..157982(-) (rpoN/rpoN1) [Niveibacterium microcysteis strain HC41]
ATGAAGCCCTCGCTCCAGCTCCGCATCTCCCAGCAGCTCGCGCTGACCCCGCAGCTGCAACAGTCGATCAAGCTGCTGCA
GCTATCGACACTGGAGCTCAACAGCGAAATCGAGCGCATGCTGCTCGAGAACCCCTTGCTCGAACGCGAAGACGCCGAGT
CGGACCCGGAAGCCTGGGGGCAATCCGCCACCACGCCGAGCGGCGACGAACGCACCGACACCGCCAACGATGCGGCGGCC
GAAGCGGCCGAGACCTCGCCCGAACCGAGCGAGCCGAGCTTCGACGATGCCGGCAGCTATGACGACGGCCCCACCGAGTG
GTCCGGCGAAGGTGGCGGCAGCGGCAATCGCGACGATGACGACGAAACGGATTTCCAGGAATTCCGTGCTGCGCAGACGA
GCCTGCGCGACCACCTGGATGAACAAGTTGCCCTGATGCCGCTGTCGGACCGCGATCGCGCGCTGCTGCGCTTCATGATC
GAAGCGCTCGACGACGATGGCTATCTGACCCAGCCGCTCGACGAACTGCTGGAGCTGTTGCCGCCCGAGTTTGAAGTTGA
CGTCGACGAGCTGCAGATCGCCCTCGCGCACCTGCAGAACCTCGATCCGCCGGGCATCGGCGCACGCTCGCCAGGCGAAT
GCCTGAAGCTGCAATTGCGCCTGCTGCCTGAGAGCGCTGCGCGTGAAGCCGCGATCATCATCGTTGAGCAGCATCTGGAG
CTGCTGGCCGCGCGGGATTTCGTGCGACTCAAGCGGCATCTGGGTTGCAGCGACGAAACGCTGCGCGAGGCGCACCAGCT
CGTTTGCAGCCTCGATCCGCGCCCCGGTGCGCGGTTTGCCGCAATCGAGACGCGATATGTGATCCCGGATGTGATCGTGC
GCAAGGTGCGCGGCCACTGGAGTGCGACACTGAACCCGGACGCGATGCCCAAGCTGCGGATCAACCAGCTCTACGCCGGA
ATCCTGCAGCAGAACCGCGGCTCGGCCGGATCGCTGGCCGGGCAGTTGCAGGAGGCACGCTGGATGATCAAGAACGTGCA
GCAACGGTTTGACACGATCCTGCGGGTATCCCAGGCAATCGTTGACCGCCAGCGGCAGTTCTTCGATTATGGGGACGTGG
CAATGCGTCCGCTGACACTGCGCGAAATCGCGGAGCAGCTTGATCTGCATGAGTCGACGATCTCTCGGGTGACCACGCAG
AAGTACATGGCCACGCCAAGAGGTATCCTTGAACTGAAGTATTTTTTCGGCAGCCACGTCGCCACGGATTCTGGCGGCGC
GTGTTCAGCTACGGCGATTCGTGCGCTGATTCGCCAGCTGGTCGCGGCAGAGGATCGCAAAAAACCGCTATCCGATGCGC
GGATTGCCGAGCTTCTCGGCCAGCAGGGGATTGTCGTTGCGCGACGAACCATCGCAAAGTACCGCGAGTCGCTCAACATC
CCGCCGGTCAGCCAGCGCAAGATGATCTGA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(334-487)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(125-318)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

56.832

100

0.587