Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JTI59_RS13675 Genome accession   NZ_CP070511
Coordinates   2692833..2693657 (-) Length   274 a.a.
NCBI ID   WP_223812267.1    Uniprot ID   -
Organism   Parageobacillus toebii strain NEB718     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2687833..2698657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTI59_RS13655 (JTI59_13655) - 2688547..2689470 (-) 924 WP_205423917.1 dipeptidase -
  JTI59_RS13660 (JTI59_13660) spoVS 2689563..2689823 (-) 261 WP_015863525.1 stage V sporulation protein SpoVS -
  JTI59_RS13665 (JTI59_13665) - 2689938..2690732 (-) 795 WP_015863524.1 TIGR00282 family metallophosphoesterase -
  JTI59_RS13670 (JTI59_13670) rny 2690816..2692372 (-) 1557 WP_015863523.1 ribonuclease Y -
  JTI59_RS13675 (JTI59_13675) recA 2692833..2693657 (-) 825 WP_223812267.1 recombinase RecA Machinery gene
  JTI59_RS13680 (JTI59_13680) - 2694751..2695038 (-) 288 Protein_2671 DNA recombination/repair protein RecA -
  JTI59_RS13685 (JTI59_13685) cinA 2695202..2696452 (-) 1251 WP_205423918.1 competence/damage-inducible protein A Machinery gene
  JTI59_RS13690 (JTI59_13690) pgsA 2696489..2697067 (-) 579 WP_015863518.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JTI59_RS13695 (JTI59_13695) - 2697124..2698008 (-) 885 WP_205423919.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 274 a.a.        Molecular weight: 30082.18 Da        Isoelectric Point: 4.9990

>NTDB_id=540424 JTI59_RS13675 WP_223812267.1 2692833..2693657(-) (recA) [Parageobacillus toebii strain NEB718]
MKRGKIAPPGNAEGDYYLSLSLDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEG
EMGDAHVGLQARLMSQALRKLSGAINKSKAIAIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQIKQGNDM
VGNKTKIKVVKNKVAPPFKTADVDIMYGEGISREGEIIDMASELDIVQKSGSWYSYKDERLGQGRENAKQFLKENPHIAE
EIAQEIRRHYGIESPSVSNNANETQQEELGFLED

Nucleotide


Download         Length: 825 bp        

>NTDB_id=540424 JTI59_RS13675 WP_223812267.1 2692833..2693657(-) (recA) [Parageobacillus toebii strain NEB718]
GTGAAGCGGGGGAAAATAGCCCCTCCGGGTAATGCCGAGGGTGACTATTACCTATCGCTATCGCTTGATCCAGTTTATGC
ACAAAAGCTAGGCGTAAACATCGATGAGTTGTTGCTTTCCCAGCCGGATACAGGAGAACAGGCATTGGAGATTGCCGAGG
CATTAGTAAGAAGCGGCGCGGTTGATATTATCGTTATTGACTCTGTTGCGGCGCTTGTACCGAAAGCGGAAATTGAAGGA
GAAATGGGCGATGCCCACGTTGGTTTGCAAGCGCGTCTTATGTCACAAGCATTGCGCAAATTATCCGGAGCGATTAATAA
ATCAAAGGCAATCGCTATTTTCATCAACCAAATTCGCGAAAAAGTCGGAGTGATGTTTGGAAATCCGGAGACGACACCAG
GCGGCCGAGCTCTAAAATTTTATGCTTCGGTCCGTTTAGAAGTGCGCCGTGCCGAACAAATTAAACAGGGCAATGACATG
GTTGGAAATAAAACAAAAATTAAAGTAGTAAAAAATAAAGTTGCCCCTCCATTTAAAACGGCTGATGTAGATATTATGTA
CGGAGAGGGAATTTCCCGAGAAGGCGAAATCATCGATATGGCATCAGAGCTGGATATCGTGCAAAAAAGCGGTTCTTGGT
ATTCGTATAAAGACGAGCGTCTAGGTCAAGGACGTGAAAATGCAAAACAGTTTTTAAAAGAAAATCCGCATATCGCTGAA
GAAATTGCACAAGAAATCCGTAGACATTACGGAATTGAATCGCCTTCTGTTTCGAACAACGCAAACGAGACGCAACAAGA
GGAGCTTGGATTTTTAGAAGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.076

86.496

0.745
  recA Latilactobacillus sakei subsp. sakei 23K

71.26

92.701

0.661
  recA Streptococcus pneumoniae R6

66.798

92.336

0.617
  recA Streptococcus pneumoniae TIGR4

66.798

92.336

0.617
  recA Streptococcus pneumoniae Rx1

66.798

92.336

0.617
  recA Streptococcus pneumoniae D39

66.798

92.336

0.617
  recA Streptococcus mitis NCTC 12261

69.492

86.131

0.599
  recA Streptococcus pyogenes NZ131

65.079

91.971

0.599
  recA Streptococcus mitis SK321

69.068

86.131

0.595
  recA Ralstonia pseudosolanacearum GMI1000

65.182

90.146

0.588
  recA Streptococcus mutans UA159

68.22

86.131

0.588
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

85.401

0.569
  recA Lactococcus lactis subsp. cremoris KW2

66.102

86.131

0.569
  recA Glaesserella parasuis strain SC1401

60.63

92.701

0.562
  recA Neisseria gonorrhoeae MS11

62.348

90.146

0.562
  recA Neisseria gonorrhoeae MS11

62.348

90.146

0.562
  recA Neisseria gonorrhoeae strain FA1090

62.348

90.146

0.562
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.96

82.847

0.555
  recA Vibrio cholerae strain A1552

66.96

82.847

0.555
  recA Pseudomonas stutzeri DSM 10701

66.52

82.847

0.551
  recA Acinetobacter baumannii D1279779

64.629

83.577

0.54
  recA Acinetobacter baylyi ADP1

59.919

90.146

0.54
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.362

84.672

0.536
  recA Helicobacter pylori 26695

62.5

84.672

0.529
  recA Helicobacter pylori strain NCTC11637

62.5

84.672

0.529
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.332

81.387

0.507