Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   JTI59_RS13685 Genome accession   NZ_CP070511
Coordinates   2695202..2696452 (-) Length   416 a.a.
NCBI ID   WP_205423918.1    Uniprot ID   -
Organism   Parageobacillus toebii strain NEB718     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2690202..2701452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTI59_RS13670 (JTI59_13670) rny 2690816..2692372 (-) 1557 WP_015863523.1 ribonuclease Y -
  JTI59_RS13675 (JTI59_13675) recA 2692833..2693657 (-) 825 WP_223812267.1 recombinase RecA Machinery gene
  JTI59_RS13680 (JTI59_13680) - 2694751..2695038 (-) 288 Protein_2671 DNA recombination/repair protein RecA -
  JTI59_RS13685 (JTI59_13685) cinA 2695202..2696452 (-) 1251 WP_205423918.1 competence/damage-inducible protein A Machinery gene
  JTI59_RS13690 (JTI59_13690) pgsA 2696489..2697067 (-) 579 WP_015863518.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JTI59_RS13695 (JTI59_13695) - 2697124..2698008 (-) 885 WP_205423919.1 helix-turn-helix domain-containing protein -
  JTI59_RS13700 (JTI59_13700) - 2698033..2698824 (-) 792 WP_015863516.1 DUF3388 domain-containing protein -
  JTI59_RS13705 (JTI59_13705) - 2698957..2699205 (-) 249 WP_062678189.1 DUF3243 domain-containing protein -
  JTI59_RS13710 (JTI59_13710) ymfI 2699268..2699984 (-) 717 WP_015863514.1 elongation factor P 5-aminopentanone reductase -
  JTI59_RS13715 (JTI59_13715) yfmH 2700025..2701317 (-) 1293 WP_015863513.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45431.34 Da        Isoelectric Point: 6.1923

>NTDB_id=540425 JTI59_RS13685 WP_205423918.1 2695202..2696452(-) (cinA) [Parageobacillus toebii strain NEB718]
MNAEIIAVGSELLLGQIANTNAQFLSEKLAELGINVYFHTVVGDNAGRLEQAVRVAQARAELIIFTGGLGPTKDDLTKET
IARLLGRELVIDEEALRSIEAYFARTNRTMTENNKKQALVLQGSTILKNEHGMAPGMAITLNSITYMLLPGPPKEMQPMF
LKYGRPFLMEQLGRHERIESRVLRFFGIGESQLETDIEDLIDQQSNPTIAPLAGDGEVALRLTAKHHSEIEAKKLLDKTE
QAILERVGRYFYGYNDETLFKKTVKMLKEKKKTIAAAESLTGGLFLTELTAIPGASQVVRGGVVCYANEVKEKVLHVPAS
VLTTDGAVSERCAQLLAENVRTLCHADIGISFTGVAGPDPLEGKPVGTVYIGISTPENETEVYALAFPGQRDAIRIRTAK
YGCSIILKKLAAAYEG

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=540425 JTI59_RS13685 WP_205423918.1 2695202..2696452(-) (cinA) [Parageobacillus toebii strain NEB718]
TTGAATGCGGAGATTATTGCTGTCGGCTCTGAGTTATTGCTTGGGCAGATTGCCAACACGAATGCACAGTTTTTATCTGA
AAAGCTCGCTGAACTTGGAATCAATGTCTATTTTCATACCGTTGTAGGCGACAATGCCGGCCGGCTCGAACAGGCGGTAA
GAGTGGCGCAGGCGCGTGCCGAACTCATTATTTTTACTGGCGGGCTTGGGCCGACGAAAGATGATTTAACGAAAGAAACG
ATCGCCCGCCTGTTAGGGCGCGAGCTTGTGATCGATGAGGAAGCGCTTCGTTCCATTGAAGCATATTTTGCCCGCACAAA
CCGGACCATGACAGAAAATAATAAAAAACAGGCGCTTGTATTACAAGGATCTACTATATTGAAAAACGAACACGGAATGG
CACCTGGAATGGCAATTACGCTGAATTCAATTACGTATATGCTTCTTCCCGGCCCTCCAAAAGAAATGCAGCCGATGTTT
CTCAAATATGGCCGACCGTTTTTAATGGAACAGCTTGGCCGTCATGAGCGCATTGAATCGCGTGTATTACGCTTTTTCGG
AATCGGTGAGTCGCAGCTGGAAACAGACATTGAAGATCTTATTGATCAACAATCAAACCCGACGATTGCCCCGCTTGCTG
GTGACGGAGAAGTAGCGTTGCGCTTGACCGCGAAACACCATTCCGAAATCGAAGCAAAAAAACTTTTAGATAAAACGGAA
CAAGCGATTTTAGAGCGCGTCGGCCGCTATTTTTATGGCTATAATGACGAAACGTTGTTTAAAAAGACCGTGAAGATGTT
GAAGGAAAAAAAGAAAACGATCGCGGCGGCAGAAAGCCTCACAGGCGGACTTTTCTTAACCGAATTAACGGCCATTCCCG
GCGCTTCTCAAGTTGTCCGCGGCGGAGTTGTCTGCTATGCCAATGAAGTAAAAGAGAAAGTTCTTCACGTTCCTGCTTCT
GTTTTGACAACAGATGGAGCAGTAAGCGAACGTTGTGCGCAGCTATTAGCGGAAAATGTCCGCACACTTTGTCATGCTGA
TATTGGCATCAGTTTTACAGGCGTAGCAGGACCAGACCCGCTTGAAGGAAAGCCAGTCGGCACTGTATATATTGGCATTT
CCACCCCTGAAAACGAGACAGAAGTCTATGCCCTTGCATTCCCCGGTCAGCGTGATGCGATTCGAATTCGTACCGCGAAA
TATGGTTGCTCCATTATATTAAAAAAATTGGCGGCTGCATATGAAGGGTAG

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(257-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.52

98.077

0.603
  cinA Streptococcus mitis SK321

48.333

100

0.488
  cinA Streptococcus mitis NCTC 12261

48.095

100

0.486
  cinA Streptococcus pneumoniae TIGR4

47.857

100

0.483
  cinA Streptococcus pneumoniae Rx1

47.857

100

0.483
  cinA Streptococcus pneumoniae R6

47.857

100

0.483
  cinA Streptococcus pneumoniae D39

47.619

100

0.481
  cinA Streptococcus mutans UA159

47.101

99.519

0.469
  cinA Streptococcus suis isolate S10

43.947

91.346

0.401