Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JSQ81_RS19365 Genome accession   NZ_CP070502
Coordinates   3864771..3865844 (+) Length   357 a.a.
NCBI ID   WP_212605608.1    Uniprot ID   A0A975KPZ1
Organism   Sporosarcina sp. Marseille-Q4063     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3859771..3870844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSQ81_RS19340 (JSQ81_19340) ymfI 3860086..3860820 (+) 735 WP_212605603.1 elongation factor P 5-aminopentanone reductase -
  JSQ81_RS19345 (JSQ81_19345) - 3860972..3861793 (+) 822 WP_212605604.1 DUF3388 domain-containing protein -
  JSQ81_RS19350 (JSQ81_19350) - 3861816..3862697 (+) 882 WP_212605605.1 RodZ domain-containing protein -
  JSQ81_RS19355 (JSQ81_19355) pgsA 3862746..3863324 (+) 579 WP_212605606.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JSQ81_RS19360 (JSQ81_19360) cinA 3863338..3864576 (+) 1239 WP_212605607.1 competence/damage-inducible protein A Machinery gene
  JSQ81_RS19365 (JSQ81_19365) recA 3864771..3865844 (+) 1074 WP_212605608.1 recombinase RecA Machinery gene
  JSQ81_RS19370 (JSQ81_19370) rny 3866938..3868497 (+) 1560 WP_212605609.1 ribonuclease Y -
  JSQ81_RS19375 (JSQ81_19375) - 3868574..3869371 (+) 798 WP_212605610.1 TIGR00282 family metallophosphoesterase -
  JSQ81_RS19380 (JSQ81_19380) - 3869458..3869748 (+) 291 WP_212605611.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38640.86 Da        Isoelectric Point: 5.0265

>NTDB_id=540282 JSQ81_RS19365 WP_212605608.1 3864771..3865844(+) (recA) [Sporosarcina sp. Marseille-Q4063]
MKNRKAALDMALKQIEKQFGKGSVMKLGEKTDRQISTTSSGSLSLDIALGVGGYPRGRVVEIYGPESSGKTTVALHAIAA
AQAEGGTAAFIDAEHALDPEYAKRLGVNIDELLLSQPDTGEQALEICEALVRSGAVDIVVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSRTNAIFINQIREKVGVMFGSPEVTPGGRALKFYASVRIDVRRGEAIKQGTEIVGNKT
RIRVVKNKVAPPFRLAEVDIMYGLGISQEGEIVDLGTEVEVVQRSGSWYSYEGERLGQGRENAKQFLIENPDVKKAIDKK
IRDHYNLDGEATVVEGHDVDDEAEAKELELLLDDEKN

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=540282 JSQ81_RS19365 WP_212605608.1 3864771..3865844(+) (recA) [Sporosarcina sp. Marseille-Q4063]
TTGAAAAATCGTAAAGCAGCATTAGATATGGCGTTAAAGCAAATTGAGAAACAATTTGGTAAAGGATCTGTTATGAAACT
TGGTGAAAAAACGGATCGCCAAATTTCAACAACGTCAAGCGGATCACTCTCCCTAGACATCGCACTTGGAGTAGGCGGAT
ATCCACGTGGCCGGGTTGTAGAAATTTATGGACCTGAGAGTTCAGGTAAAACGACAGTCGCACTCCATGCGATTGCCGCA
GCACAGGCAGAAGGTGGAACAGCCGCATTTATTGACGCGGAGCATGCACTTGATCCTGAATATGCAAAACGTCTTGGTGT
TAATATAGATGAACTTTTATTATCACAACCTGATACAGGAGAACAAGCACTCGAAATTTGTGAGGCGCTTGTTCGTAGTG
GCGCGGTCGACATTGTCGTCGTTGACTCGGTTGCTGCTCTTGTTCCAAAAGCTGAAATTGAAGGAGAGATGGGCGACTCG
CACGTTGGTTTGCAAGCGCGCTTGATGTCTCAAGCACTTCGTAAATTATCGGGTGCCATTAATAAATCAAGAACGAACGC
AATTTTCATCAACCAAATCCGTGAAAAAGTCGGGGTCATGTTCGGTAGTCCTGAAGTTACACCAGGAGGACGTGCACTGA
AGTTTTATGCTTCAGTTCGGATTGATGTTCGCCGCGGAGAAGCTATTAAACAGGGAACTGAAATTGTCGGAAACAAGACG
CGTATCAGAGTCGTGAAAAACAAAGTCGCGCCACCATTCCGTCTTGCTGAAGTCGATATTATGTACGGCTTGGGCATTTC
GCAAGAAGGTGAAATTGTAGACCTCGGTACTGAAGTAGAAGTAGTTCAACGTAGTGGGTCATGGTATTCCTACGAAGGAG
AGCGTCTGGGACAGGGTCGAGAAAACGCGAAGCAATTCTTGATCGAAAATCCGGATGTTAAAAAAGCCATTGATAAAAAA
ATTCGCGATCATTATAACCTTGACGGAGAAGCTACAGTCGTTGAAGGACATGATGTAGATGATGAAGCTGAAGCTAAAGA
ACTCGAATTATTACTAGATGACGAAAAGAACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

80.48

93.277

0.751
  recA Latilactobacillus sakei subsp. sakei 23K

73.148

90.756

0.664
  recA Streptococcus mutans UA159

64.345

100

0.647
  recA Streptococcus pneumoniae R6

66.265

92.997

0.616
  recA Streptococcus pneumoniae TIGR4

66.265

92.997

0.616
  recA Streptococcus mitis SK321

66.265

92.997

0.616
  recA Streptococcus pneumoniae Rx1

66.265

92.997

0.616
  recA Streptococcus pneumoniae D39

66.265

92.997

0.616
  recA Streptococcus mitis NCTC 12261

65.964

92.997

0.613
  recA Lactococcus lactis subsp. cremoris KW2

66.768

91.877

0.613
  recA Streptococcus pyogenes NZ131

66.871

91.317

0.611
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.391

90.196

0.608
  recA Vibrio cholerae strain A1552

67.391

90.196

0.608
  recA Glaesserella parasuis strain SC1401

60.114

98.319

0.591
  recA Pseudomonas stutzeri DSM 10701

65.732

89.916

0.591
  recA Ralstonia pseudosolanacearum GMI1000

64.329

91.877

0.591
  recA Neisseria gonorrhoeae strain FA1090

62.5

94.118

0.588
  recA Neisseria gonorrhoeae MS11

62.5

94.118

0.588
  recA Neisseria gonorrhoeae MS11

62.5

94.118

0.588
  recA Acinetobacter baumannii D1279779

59.659

98.599

0.588
  recA Acinetobacter baylyi ADP1

63.665

90.196

0.574
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.767

96.078

0.574
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.774

91.597

0.566
  recA Helicobacter pylori strain NCTC11637

61.61

90.476

0.557
  recA Helicobacter pylori 26695

61.3

90.476

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.436

89.916

0.543