Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   JSQ81_RS19360 Genome accession   NZ_CP070502
Coordinates   3863338..3864576 (+) Length   412 a.a.
NCBI ID   WP_212605607.1    Uniprot ID   A0A975KPI4
Organism   Sporosarcina sp. Marseille-Q4063     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3858338..3869576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSQ81_RS19335 (JSQ81_19335) yfmH 3858792..3860093 (+) 1302 WP_212605602.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  JSQ81_RS19340 (JSQ81_19340) ymfI 3860086..3860820 (+) 735 WP_212605603.1 elongation factor P 5-aminopentanone reductase -
  JSQ81_RS19345 (JSQ81_19345) - 3860972..3861793 (+) 822 WP_212605604.1 DUF3388 domain-containing protein -
  JSQ81_RS19350 (JSQ81_19350) - 3861816..3862697 (+) 882 WP_212605605.1 RodZ domain-containing protein -
  JSQ81_RS19355 (JSQ81_19355) pgsA 3862746..3863324 (+) 579 WP_212605606.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JSQ81_RS19360 (JSQ81_19360) cinA 3863338..3864576 (+) 1239 WP_212605607.1 competence/damage-inducible protein A Machinery gene
  JSQ81_RS19365 (JSQ81_19365) recA 3864771..3865844 (+) 1074 WP_212605608.1 recombinase RecA Machinery gene
  JSQ81_RS19370 (JSQ81_19370) rny 3866938..3868497 (+) 1560 WP_212605609.1 ribonuclease Y -
  JSQ81_RS19375 (JSQ81_19375) - 3868574..3869371 (+) 798 WP_212605610.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44694.27 Da        Isoelectric Point: 4.8895

>NTDB_id=540281 JSQ81_RS19360 WP_212605607.1 3863338..3864576(+) (cinA) [Sporosarcina sp. Marseille-Q4063]
MKVEIIAVGSELLLGQITNTNAAFMSSRLAEIGVDVYFHTVVGDNPKRLEEAITIAEKRANVLVFSGGLGPTKDDMTKET
IAKHIGLSLVSDDEALKQIEQYFERSKRGMTENNKKQALVLEGSEVLPNRTGMAPGMVVEKEGIQYILLPGPPHELQPMF
VDEAIPYLLKVNGKKEVITSRVLKFYGIGEAELEHRIQPLLEKQSNPTVAPLATAEAVTLRITAKASTIDEANQLIDPVE
EEIRSIVGEYIYGIDDDTLSSKAVELLKKKGFTLSAAESLTAGLFLAELADEPGISGTLSGGVIVYDEEAKVNQLGVEQK
LLDEYGVVSKECAGSLAFNVQQKFKTNVGVGITGAAGPTPHDGEPVGTVWIGIALPNEKPATYKLLLSGTRNNNRLRSAR
FALYYLIKELSK

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=540281 JSQ81_RS19360 WP_212605607.1 3863338..3864576(+) (cinA) [Sporosarcina sp. Marseille-Q4063]
ATGAAAGTTGAGATTATTGCTGTTGGCTCCGAATTATTACTCGGTCAAATTACGAACACTAACGCGGCCTTTATGTCGTC
CCGTCTTGCAGAAATAGGGGTAGACGTGTATTTTCACACAGTAGTCGGAGATAATCCGAAGCGGTTAGAAGAAGCAATTA
CGATTGCGGAAAAACGTGCGAATGTTCTTGTTTTCTCGGGGGGACTCGGACCGACTAAAGACGATATGACAAAAGAAACA
ATAGCTAAACATATCGGCTTATCACTAGTAAGTGATGATGAAGCACTTAAACAAATTGAACAGTATTTTGAGCGAAGTAA
GCGCGGCATGACGGAAAACAATAAAAAACAAGCTTTAGTATTAGAAGGCTCGGAAGTACTTCCGAATCGTACTGGAATGG
CCCCAGGAATGGTTGTTGAAAAAGAAGGTATTCAATACATACTTTTACCAGGGCCGCCTCATGAGCTGCAACCGATGTTC
GTTGATGAAGCAATTCCATATTTGCTTAAGGTCAATGGTAAAAAAGAAGTGATTACATCACGTGTCTTGAAGTTTTACGG
GATCGGCGAAGCGGAACTTGAACATCGCATTCAACCACTTTTAGAAAAACAGTCCAATCCAACCGTGGCTCCTTTAGCGA
CGGCTGAAGCGGTCACGTTACGAATTACTGCAAAAGCGAGTACAATCGATGAAGCCAATCAACTGATCGATCCAGTTGAA
GAAGAAATTCGTTCCATCGTAGGCGAATACATATATGGAATCGACGATGACACATTATCTTCAAAAGCTGTAGAACTACT
GAAGAAAAAAGGATTTACATTATCAGCTGCGGAAAGTTTAACGGCAGGTTTATTCCTCGCTGAACTTGCTGACGAACCTG
GAATTAGCGGCACACTATCTGGCGGAGTTATCGTTTACGACGAAGAAGCAAAAGTAAATCAACTTGGTGTCGAACAGAAA
TTGCTTGATGAGTACGGCGTGGTGAGTAAGGAATGTGCCGGATCTCTCGCATTCAATGTCCAACAGAAATTCAAAACAAA
TGTCGGCGTTGGAATAACAGGTGCGGCAGGCCCGACTCCACATGATGGAGAACCAGTGGGCACTGTTTGGATAGGTATCG
CTTTGCCAAATGAAAAGCCTGCAACATACAAACTTTTATTATCAGGAACGAGAAATAACAATCGCCTGCGTTCAGCACGT
TTTGCGCTTTATTACTTGATCAAAGAGCTTTCGAAATAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.582

99.757

0.515
  cinA Streptococcus mitis SK321

46.114

93.689

0.432
  cinA Streptococcus pneumoniae TIGR4

45.953

92.961

0.427
  cinA Streptococcus mitis NCTC 12261

45.953

92.961

0.427
  cinA Streptococcus pneumoniae Rx1

45.692

92.961

0.425
  cinA Streptococcus pneumoniae R6

45.692

92.961

0.425
  cinA Streptococcus pneumoniae D39

45.431

92.961

0.422
  cinA Streptococcus mutans UA159

41.889

100

0.42
  cinA Streptococcus suis isolate S10

38.961

93.447

0.364