Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GGS_RS10095 Genome accession   NC_018712
Coordinates   2082346..2083452 (-) Length   368 a.a.
NCBI ID   WP_041784706.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis RE378     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2077346..2088452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GGS_RS10070 (GGS_1910) - 2078643..2080205 (-) 1563 WP_015017497.1 membrane protein -
  GGS_RS10075 (GGS_1911) - 2080541..2080846 (-) 306 WP_003058733.1 DUF1292 domain-containing protein -
  GGS_RS10080 (GGS_1912) ruvX 2080857..2081276 (-) 420 WP_003053103.1 Holliday junction resolvase RuvX -
  GGS_RS10085 - 2081273..2081542 (-) 270 WP_003045720.1 IreB family regulatory phosphoprotein -
  GGS_RS10090 (GGS_1913) spx 2081654..2082052 (-) 399 WP_003053105.1 transcriptional regulator Spx -
  GGS_RS10095 (GGS_1914) recA 2082346..2083452 (-) 1107 WP_041784706.1 recombinase RecA Machinery gene
  GGS_RS10100 (GGS_1915) cinA 2083588..2084859 (-) 1272 WP_003058772.1 competence/damage-inducible protein A Machinery gene
  GGS_RS10105 (GGS_1916) - 2084928..2085488 (-) 561 WP_011018314.1 DNA-3-methyladenine glycosylase I -
  GGS_RS10110 (GGS_1917) ruvA 2085498..2086094 (-) 597 WP_015017499.1 Holliday junction branch migration protein RuvA -
  GGS_RS10115 (GGS_1918) - 2086096..2087316 (-) 1221 WP_003058727.1 MFS transporter -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 39461.84 Da        Isoelectric Point: 4.7135

>NTDB_id=53983 GGS_RS10095 WP_041784706.1 2082346..2083452(-) (recA) [Streptococcus dysgalactiae subsp. equisimilis RE378]
MTKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVAL
HAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDG
DIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGTTQIKGTGDQ
KDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKIGQGSENAKRYLADHP
ELFDEIDRKVRVKFGLLEESEEESAMAVAAEETDDLVLDLDNGIEIED

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=53983 GGS_RS10095 WP_041784706.1 2082346..2083452(-) (recA) [Streptococcus dysgalactiae subsp. equisimilis RE378]
ATCACTAAAAAATTTGGTGACGAGCGTCGTAAGGCACTTGATGATGCCCTAAAAAATATTGAAAAAGATTTTGGTAAGGG
TGCAGTGATGCGCTTGGGAGAACGTGCAGAGCAAAAAGTTCAGGTTATGAGTTCAGGAAGCCTAGCTCTTGATATTGCGC
TTGGAGCAGGTGGTTATCCTAAAGGACGTATCATTGAGATCTATGGTCCAGAATCTTCTGGTAAAACAACTGTGGCTTTA
CATGCTGTGGCACAAGCTCAAAAAGAAGGTGGAATCGCAGCCTTTATCGATGCCGAGCATGCGCTTGATCCAGCTTACGC
TGCTGCGCTTGGGGTTAATATTGATGAACTCCTCTTGTCTCAACCAGATTCTGGAGAACAAGGACTTGAAATTGCAGGTA
AATTGATTGATTCTGGTGCGGTTGACTTGGTTGTTGTCGATTCAGTAGCAGCTTTAGTGCCACGTGCTGAAATTGATGGT
GATATTGGCGATAGCCATGTCGGATTGCAAGCACGTATGATGAGTCAGGCGATGCGTAAGCTATCAGCTTCTATTAACAA
AACAAAAACTATCGCTATCTTTATTAACCAATTGCGTGAAAAAGTTGGTGTGATGTTTGGAAATCCTGAAACAACACCGG
GTGGTCGTGCCTTGAAATTCTATGCTTCTGTTCGTTTAGATGTGCGTGGAACCACTCAAATTAAAGGAACTGGTGACCAA
AAAGACAGTAGTATTGGTAAAGAAACAAAAATCAAAGTTGTTAAAAACAAGGTAGCTCCTCCGTTTAAAGTGGCAGAGGT
TGAAATCATGTATGGAGAAGGCATTTCCCGTACTGGAGAGCTTGTGAAAATTGCTTCTGATTTGGACATTATCCAAAAAG
CAGGTGCTTGGTTCTCTTATAATGGTGAGAAAATTGGTCAAGGTTCTGAAAATGCTAAGCGTTATTTGGCGGATCATCCA
GAATTATTTGATGAGATTGATCGTAAAGTACGTGTTAAATTTGGTTTGCTTGAAGAAAGCGAAGAAGAATCTGCTATGGC
AGTGGCGGCAGAAGAAACCGATGATCTTGTTTTAGATTTAGATAACGGGATTGAAATTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(11-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

98.641

100

0.986
  recA Streptococcus mutans UA159

88.204

100

0.894
  recA Streptococcus mitis NCTC 12261

85.484

100

0.864
  recA Streptococcus mitis SK321

85.714

100

0.864
  recA Streptococcus pneumoniae Rx1

84.533

100

0.861
  recA Streptococcus pneumoniae D39

84.533

100

0.861
  recA Streptococcus pneumoniae R6

84.533

100

0.861
  recA Streptococcus pneumoniae TIGR4

84.533

100

0.861
  recA Lactococcus lactis subsp. cremoris KW2

79.532

92.935

0.739
  recA Latilactobacillus sakei subsp. sakei 23K

70.623

91.576

0.647
  recA Bacillus subtilis subsp. subtilis str. 168

68.085

89.402

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.315

91.576

0.571
  recA Acinetobacter baumannii D1279779

59.207

95.924

0.568
  recA Acinetobacter baylyi ADP1

59.544

95.38

0.568
  recA Neisseria gonorrhoeae MS11

60.35

93.207

0.563
  recA Neisseria gonorrhoeae MS11

60.35

93.207

0.563
  recA Neisseria gonorrhoeae strain FA1090

60.35

93.207

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.848

87.772

0.552
  recA Glaesserella parasuis strain SC1401

57.593

94.837

0.546
  recA Vibrio cholerae strain A1552

61.231

88.315

0.541
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.231

88.315

0.541
  recA Pseudomonas stutzeri DSM 10701

57.184

94.565

0.541
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.215

89.946

0.533
  recA Helicobacter pylori strain NCTC11637

58.084

90.761

0.527
  recA Helicobacter pylori 26695

58.084

90.761

0.527
  recA Ralstonia pseudosolanacearum GMI1000

58.133

90.217

0.524

Multiple sequence alignment