Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JOJ89_RS09795 Genome accession   NZ_CP069296
Coordinates   1955178..1956215 (+) Length   345 a.a.
NCBI ID   WP_029281194.1    Uniprot ID   A0A084H407
Organism   Metabacillus sp. cB07     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1950178..1961215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOJ89_RS09770 - 1950871..1951128 (+) 258 WP_029281204.1 DUF3243 domain-containing protein -
  JOJ89_RS09775 - 1951300..1952091 (+) 792 WP_152554718.1 YmfK family protein -
  JOJ89_RS09780 - 1952104..1952991 (+) 888 WP_203290181.1 RodZ family helix-turn-helix domain-containing protein -
  JOJ89_RS09785 pgsA 1953067..1953645 (+) 579 WP_029281198.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JOJ89_RS09790 cinA 1953661..1954923 (+) 1263 WP_203290182.1 competence/damage-inducible protein A Machinery gene
  JOJ89_RS09795 recA 1955178..1956215 (+) 1038 WP_029281194.1 recombinase RecA Machinery gene
  JOJ89_RS09800 rny 1956595..1958157 (+) 1563 WP_029281192.1 ribonuclease Y -
  JOJ89_RS09805 - 1958277..1959071 (+) 795 WP_029281190.1 TIGR00282 family metallophosphoesterase -
  JOJ89_RS09810 spoVS 1959269..1959529 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -
  JOJ89_RS09815 - 1959618..1960535 (+) 918 WP_029281186.1 dipeptidase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37200.31 Da        Isoelectric Point: 4.9041

>NTDB_id=533398 JOJ89_RS09795 WP_029281194.1 1955178..1956215(+) (recA) [Metabacillus sp. cB07]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTDRKISTSPSGSLALDAALGVGGYPRGRIVEIYGPESSGKTTVALHAIAE
VQAAGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVVDSVAALVPKAEIEGEMGDA
HVGLQARLMSQALRKLSGAISKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGNKT
KVKVVKNKVAPPFRVAEVDIMYGEGISKEGEIIDLGTESDIVQKSGSWYSYNDERLGQGRENAKIFLKENPAIRLELQEK
IRSHYGLDGDAAVPEEQDELNLLED

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=533398 JOJ89_RS09795 WP_029281194.1 1955178..1956215(+) (recA) [Metabacillus sp. cB07]
GTGAGCGATCGTCAGGCTGCCTTAGATATGGCACTTAAACAAATAGAAAAACAATTTGGTAAAGGTTCAATTATGAAACT
CGGTGAACAGACCGACCGTAAAATCTCTACATCCCCAAGCGGTTCGCTTGCGCTGGATGCGGCTCTTGGAGTCGGCGGCT
ATCCGCGCGGAAGAATTGTTGAAATTTACGGACCTGAAAGTTCAGGTAAAACAACTGTTGCCCTTCATGCAATCGCTGAA
GTACAGGCTGCAGGTGGACAGGCTGCATTTATTGATGCTGAGCATGCCCTTGATCCTGTATATGCCCAGAAGCTTGGCGT
CAACATTGATGAGCTTCTTCTTTCCCAGCCGGATACAGGCGAGCAGGCCCTTGAAATTGCCGAAGCTCTTGTCCGAAGCG
GAGCTGTAGACATTCTGGTTGTCGATTCAGTGGCTGCCCTTGTTCCTAAAGCAGAAATAGAAGGAGAAATGGGAGATGCA
CACGTAGGTCTGCAGGCGCGTCTTATGTCGCAGGCGCTCCGCAAACTCTCCGGCGCGATCAGCAAGTCGAAGACTATTGC
CATTTTCATCAACCAGATCCGTGAAAAAGTCGGTGTCATGTTCGGAAACCCTGAAACGACGCCAGGCGGACGCGCTCTTA
AATTCTACTCTTCTGTCCGTCTTGAAGTGCGCCGTGCAGAAACACTAAAACAGGGAAATGAAATGGTCGGAAACAAAACG
AAAGTAAAAGTCGTCAAGAACAAGGTTGCTCCTCCATTCCGTGTTGCAGAAGTTGACATCATGTACGGAGAAGGCATTTC
CAAAGAGGGAGAGATCATCGACCTTGGAACGGAAAGCGATATTGTTCAAAAGAGCGGCTCATGGTATTCATATAATGATG
AGCGCCTGGGACAGGGAAGAGAAAACGCAAAGATCTTCCTTAAGGAAAACCCGGCCATTCGCCTTGAGCTTCAGGAGAAA
ATCCGCAGCCACTACGGATTAGACGGTGACGCTGCTGTACCTGAAGAACAAGATGAACTGAATTTGCTCGAAGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A084H407

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

89.189

96.522

0.861
  recA Latilactobacillus sakei subsp. sakei 23K

73.352

100

0.742
  recA Streptococcus pneumoniae TIGR4

66.957

100

0.67
  recA Streptococcus pneumoniae Rx1

66.957

100

0.67
  recA Streptococcus pneumoniae D39

66.957

100

0.67
  recA Streptococcus pneumoniae R6

66.957

100

0.67
  recA Streptococcus mitis SK321

66.279

99.71

0.661
  recA Streptococcus pyogenes NZ131

64.957

100

0.661
  recA Streptococcus mitis NCTC 12261

66.472

99.42

0.661
  recA Streptococcus mutans UA159

68.085

95.362

0.649
  recA Lactococcus lactis subsp. cremoris KW2

66.071

97.391

0.643
  recA Ralstonia pseudosolanacearum GMI1000

66.667

94.783

0.632
  recA Neisseria gonorrhoeae strain FA1090

66.361

94.783

0.629
  recA Neisseria gonorrhoeae MS11

66.361

94.783

0.629
  recA Neisseria gonorrhoeae MS11

66.361

94.783

0.629
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.644

94.493

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.939

95.072

0.617
  recA Acinetobacter baylyi ADP1

61.449

100

0.614
  recA Vibrio cholerae strain A1552

65.938

92.754

0.612
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.938

92.754

0.612
  recA Helicobacter pylori 26695

64

94.203

0.603
  recA Helicobacter pylori strain NCTC11637

64

94.203

0.603
  recA Pseudomonas stutzeri DSM 10701

64.486

93.043

0.6
  recA Acinetobacter baumannii D1279779

60

100

0.6
  recA Glaesserella parasuis strain SC1401

64.375

92.754

0.597
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.25

92.754

0.568