Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   JOJ89_RS09790 Genome accession   NZ_CP069296
Coordinates   1953661..1954923 (+) Length   420 a.a.
NCBI ID   WP_203290182.1    Uniprot ID   -
Organism   Metabacillus sp. cB07     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1948661..1959923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOJ89_RS09760 - 1948735..1950021 (+) 1287 WP_203290179.1 pitrilysin family protein -
  JOJ89_RS09765 - 1950077..1950790 (+) 714 WP_203290180.1 SDR family oxidoreductase -
  JOJ89_RS09770 - 1950871..1951128 (+) 258 WP_029281204.1 DUF3243 domain-containing protein -
  JOJ89_RS09775 - 1951300..1952091 (+) 792 WP_152554718.1 YmfK family protein -
  JOJ89_RS09780 - 1952104..1952991 (+) 888 WP_203290181.1 RodZ family helix-turn-helix domain-containing protein -
  JOJ89_RS09785 pgsA 1953067..1953645 (+) 579 WP_029281198.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JOJ89_RS09790 cinA 1953661..1954923 (+) 1263 WP_203290182.1 competence/damage-inducible protein A Machinery gene
  JOJ89_RS09795 recA 1955178..1956215 (+) 1038 WP_029281194.1 recombinase RecA Machinery gene
  JOJ89_RS09800 rny 1956595..1958157 (+) 1563 WP_029281192.1 ribonuclease Y -
  JOJ89_RS09805 - 1958277..1959071 (+) 795 WP_029281190.1 TIGR00282 family metallophosphoesterase -
  JOJ89_RS09810 spoVS 1959269..1959529 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45817.43 Da        Isoelectric Point: 6.5102

>NTDB_id=533397 JOJ89_RS09790 WP_203290182.1 1953661..1954923(+) (cinA) [Metabacillus sp. cB07]
MHMATKTEIIAVGSELLLGQIVNSNAQFISQQLAENGINVYYHTVVGDNPGRLKQAVKTAQERSNIIVFTGGLGPTKDDL
TKETIASMLGRKLATDEEALRSIEDYFVKVNRPMSENNKKQALVIEGSDILKNEHGMAPGMAIQENGIIYMLLPGPPSEM
KPMFLKFGLPFFRKALGRNDKIISRVLRYFGIGESQLETDIQDLIDGQSNPTIAPLAGDGEVTLRLTARHQFETEAVKLI
NDAEKAINERVGAFFYGYDQTTLAEELLRHLRQRGMTISAAESLTGGLFSDQLTAVKGTSDVFKGTIVCYTNEVKEAMLG
VSKETLDVHGAVSEQCAQEMAEQIRKLTGSDIGISFTGIAGEEPVEGKKPGTVYIGLAVKGRQTVTHQLLLAGSRNGIRK
RTVKYGCHLAVKALTENTAE

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=533397 JOJ89_RS09790 WP_203290182.1 1953661..1954923(+) (cinA) [Metabacillus sp. cB07]
ATGCACATGGCTACAAAAACAGAGATCATTGCGGTTGGATCTGAATTGCTGCTCGGGCAAATCGTCAATTCAAATGCCCA
GTTCATCTCTCAGCAGCTTGCAGAGAACGGGATTAACGTCTATTACCATACAGTGGTTGGAGATAACCCGGGCAGGCTTA
AGCAGGCAGTAAAAACAGCACAGGAACGTTCAAACATCATCGTGTTTACTGGCGGGCTCGGTCCGACGAAGGACGACCTC
ACAAAAGAAACCATCGCAAGCATGCTCGGGCGAAAACTCGCAACGGACGAGGAAGCGCTGCGCAGCATCGAAGATTATTT
TGTGAAAGTAAACCGCCCCATGTCAGAAAACAATAAAAAGCAGGCTCTTGTCATTGAGGGCTCTGATATTCTTAAAAATG
AACATGGCATGGCGCCGGGGATGGCCATTCAGGAAAACGGCATCATCTATATGCTTCTTCCCGGGCCTCCAAGTGAAATG
AAGCCGATGTTTCTTAAATTCGGACTTCCTTTTTTCAGAAAAGCACTTGGCAGAAACGATAAGATCATCTCAAGAGTTCT
CCGTTATTTCGGTATAGGGGAATCCCAGCTTGAAACGGATATTCAGGATCTGATTGACGGACAATCCAACCCTACAATTG
CTCCTCTTGCGGGTGACGGGGAAGTGACCTTACGACTGACAGCAAGGCATCAGTTTGAAACTGAAGCTGTCAAACTGATC
AACGATGCTGAAAAGGCGATAAATGAAAGAGTCGGCGCGTTTTTCTACGGATATGATCAGACGACACTTGCAGAAGAGCT
ATTAAGGCACCTGAGGCAGCGGGGAATGACCATTTCTGCAGCTGAAAGCCTGACAGGAGGGCTGTTCTCAGATCAGCTTA
CAGCCGTTAAAGGCACGTCGGACGTTTTTAAAGGAACGATTGTGTGCTATACAAATGAAGTGAAGGAAGCCATGCTCGGA
GTATCGAAAGAAACGCTTGATGTTCATGGTGCCGTCAGCGAACAATGTGCACAAGAGATGGCAGAGCAGATCAGAAAGCT
GACAGGGAGCGATATCGGAATAAGCTTCACAGGCATAGCAGGCGAAGAGCCTGTTGAAGGAAAGAAACCCGGCACTGTTT
ATATAGGTCTTGCCGTAAAGGGCAGGCAGACAGTAACGCATCAGCTCCTGCTTGCAGGAAGCAGGAACGGCATACGCAAG
CGAACAGTTAAATACGGCTGCCATCTTGCGGTAAAAGCTTTAACAGAAAATACAGCGGAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-173)

Competence-damaged protein (CinA)

(261-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

62.26

99.048

0.617
  cinA Streptococcus pneumoniae TIGR4

45.694

99.524

0.455
  cinA Streptococcus mitis SK321

45.476

100

0.455
  cinA Streptococcus mitis NCTC 12261

45.238

100

0.452
  cinA Streptococcus mutans UA159

45.783

98.81

0.452
  cinA Streptococcus pneumoniae Rx1

45.215

99.524

0.45
  cinA Streptococcus pneumoniae R6

45.215

99.524

0.45
  cinA Streptococcus pneumoniae D39

44.976

99.524

0.448
  cinA Streptococcus suis isolate S10

40.584

89.762

0.364