Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | JOS67_RS03215 | Genome accession | NZ_CP069195 |
| Coordinates | 564902..565945 (+) | Length | 347 a.a. |
| NCBI ID | WP_203346914.1 | Uniprot ID | - |
| Organism | Vibrio diabolicus strain SLV18 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 554708..582794 | 564902..565945 | within | 0 |
Gene organization within MGE regions
Location: 554708..582794
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JOS67_RS03160 (JOS67_03155) | ftsB | 554708..554989 (+) | 282 | WP_005380907.1 | cell division protein FtsB | - |
| JOS67_RS03165 (JOS67_03160) | ispD | 554991..555695 (+) | 705 | WP_104974803.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| JOS67_RS03170 (JOS67_03165) | ispF | 555713..556189 (+) | 477 | WP_005393886.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| JOS67_RS03175 (JOS67_03170) | truD | 556236..557279 (+) | 1044 | WP_203343650.1 | tRNA pseudouridine(13) synthase TruD | - |
| JOS67_RS03180 (JOS67_03175) | surE | 557279..558055 (+) | 777 | WP_005393882.1 | 5'/3'-nucleotidase SurE | - |
| JOS67_RS03185 (JOS67_03180) | - | 558055..558681 (+) | 627 | WP_203343649.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| JOS67_RS03190 (JOS67_03185) | - | 558695..559618 (+) | 924 | WP_203343648.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| JOS67_RS03195 (JOS67_03190) | rpoS | 559699..560685 (+) | 987 | WP_203346911.1 | RNA polymerase sigma factor RpoS | Regulator |
| JOS67_RS03200 (JOS67_03195) | mutS | 560768..563329 (-) | 2562 | WP_203346912.1 | DNA mismatch repair protein MutS | - |
| JOS67_RS03205 (JOS67_03200) | pncC | 563414..563896 (+) | 483 | WP_203346913.1 | nicotinamide-nucleotide amidase | - |
| JOS67_RS03210 (JOS67_03205) | recA | 564097..564714 (+) | 618 | Protein_459 | recombinase RecA | - |
| JOS67_RS03215 (JOS67_03210) | recA | 564902..565945 (+) | 1044 | WP_203346914.1 | recombinase RecA | Machinery gene |
| JOS67_RS03220 (JOS67_03215) | - | 565945..568005 (+) | 2061 | WP_203346915.1 | hypothetical protein | - |
| JOS67_RS03225 (JOS67_03220) | - | 568007..570304 (+) | 2298 | WP_203346916.1 | tyrosine-type recombinase/integrase | - |
| JOS67_RS03230 (JOS67_03225) | - | 570304..570834 (+) | 531 | WP_203346917.1 | hypothetical protein | - |
| JOS67_RS03235 (JOS67_03230) | - | 570847..572169 (+) | 1323 | WP_178310224.1 | site-specific integrase | - |
| JOS67_RS03240 (JOS67_03235) | - | 572291..572947 (+) | 657 | WP_203346918.1 | recombinase family protein | - |
| JOS67_RS03245 (JOS67_03240) | - | 573241..573846 (+) | 606 | WP_178310785.1 | porin family protein | - |
| JOS67_RS03250 (JOS67_03245) | - | 573948..574856 (-) | 909 | WP_203346919.1 | hypothetical protein | - |
| JOS67_RS03255 (JOS67_03250) | - | 575017..575232 (-) | 216 | WP_238935353.1 | hypothetical protein | - |
| JOS67_RS03260 (JOS67_03255) | - | 575319..575825 (-) | 507 | Protein_469 | chromosome partitioning protein ParB | - |
| JOS67_RS03265 (JOS67_03260) | - | 575899..577076 (+) | 1178 | WP_203346719.1 | IS3 family transposase | - |
| JOS67_RS03270 (JOS67_03265) | - | 577085..577804 (-) | 720 | Protein_471 | chromosome partitioning protein ParB | - |
| JOS67_RS03275 (JOS67_03270) | - | 577986..579170 (+) | 1185 | WP_203347248.1 | hypothetical protein | - |
| JOS67_RS03280 (JOS67_03275) | - | 579243..580352 (+) | 1110 | WP_203346920.1 | hypothetical protein | - |
| JOS67_RS03285 (JOS67_03280) | - | 580572..580904 (+) | 333 | WP_140054609.1 | hypothetical protein | - |
| JOS67_RS03290 (JOS67_03285) | - | 581099..581443 (+) | 345 | WP_178310776.1 | hypothetical protein | - |
| JOS67_RS03295 (JOS67_03290) | - | 581621..582442 (-) | 822 | WP_203346921.1 | hypothetical protein | - |
| JOS67_RS03300 (JOS67_03295) | - | 582501..582794 (-) | 294 | WP_203346922.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 347 a.a. Molecular weight: 37227.69 Da Isoelectric Point: 4.9706
>NTDB_id=532819 JOS67_RS03215 WP_203346914.1 564902..565945(+) (recA) [Vibrio diabolicus strain SLV18]
MDENKQKALAAALGQIEKQFGKGSIMKLGDNRTMDVETISTGSLALDIALGAGGLPMGRIVEIYGPESSGKTTLTLEAIA
AAQKAGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAIDVMVIDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQILYGKGFNRFGELIDLGVKCKLVEKAGAWYSYKGDKIGQGKANACKYIEENSHISEELDA
KLRELLLATDTVGEETASTEVVDGEEF
MDENKQKALAAALGQIEKQFGKGSIMKLGDNRTMDVETISTGSLALDIALGAGGLPMGRIVEIYGPESSGKTTLTLEAIA
AAQKAGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAIDVMVIDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQILYGKGFNRFGELIDLGVKCKLVEKAGAWYSYKGDKIGQGKANACKYIEENSHISEELDA
KLRELLLATDTVGEETASTEVVDGEEF
Nucleotide
Download Length: 1044 bp
>NTDB_id=532819 JOS67_RS03215 WP_203346914.1 564902..565945(+) (recA) [Vibrio diabolicus strain SLV18]
ATGGATGAGAACAAACAAAAAGCACTCGCCGCCGCTCTAGGTCAAATTGAAAAGCAATTCGGTAAAGGTTCCATCATGAA
GCTGGGCGACAACCGCACTATGGATGTTGAAACTATCTCCACAGGCTCTCTTGCATTGGATATCGCATTGGGAGCAGGTG
GCCTGCCGATGGGACGTATCGTTGAAATATATGGCCCCGAGTCGTCAGGTAAAACAACACTTACTCTTGAAGCGATTGCC
GCAGCGCAGAAAGCAGGTAAAACCTGTGCATTCATTGATGCAGAACATGCTCTCGATCCTATCTATGCTAAAAAGCTCGG
CGTAAACATTGATGAATTGTTAGTTTCTCAGCCGGATACTGGTGAGCAAGCCCTTGAGATTTGTGATGCTCTGGCTCGCT
CTGGTGCGATTGATGTGATGGTTATTGACTCTGTAGCTGCATTGACACCTAAAGCTGAAATTGAAGGTGAGATGGGCGAT
TCTCATATGGGGTTACAGGCAAGAATGTTATCCCAAGCAATGCGTAAATTAACGGGTAACCTAAAGCAATCGAACTGCAT
GGCGATATTTATTAACCAAATCCGAATGAAGATCGGCGTTATGTTCGGAAATCCGGAAACAACCACGGGCGGTAACGCTC
TAAAATTCTACGCTTCAGTTCGTCTTGATATTCGTCGCACGGGCGCTATTAAAGAAGGTGATGAGGTTGTTGGTAATGAA
ACTCGCATTAAAGTGGTAAAGAACAAAATTGCTGCGCCGTTTAAAGAAGCCAACACTCAAATTTTGTATGGAAAAGGCTT
TAACCGCTTTGGTGAGCTGATTGACCTTGGTGTTAAATGTAAGCTTGTTGAGAAAGCTGGCGCTTGGTATAGCTATAAGG
GTGACAAGATTGGTCAAGGTAAGGCCAATGCCTGTAAGTATATTGAAGAAAATAGCCACATTTCAGAAGAGTTAGATGCT
AAGTTGCGTGAGCTGTTACTAGCAACTGATACAGTTGGCGAGGAAACCGCTTCTACAGAAGTAGTGGATGGTGAAGAGTT
TTAA
ATGGATGAGAACAAACAAAAAGCACTCGCCGCCGCTCTAGGTCAAATTGAAAAGCAATTCGGTAAAGGTTCCATCATGAA
GCTGGGCGACAACCGCACTATGGATGTTGAAACTATCTCCACAGGCTCTCTTGCATTGGATATCGCATTGGGAGCAGGTG
GCCTGCCGATGGGACGTATCGTTGAAATATATGGCCCCGAGTCGTCAGGTAAAACAACACTTACTCTTGAAGCGATTGCC
GCAGCGCAGAAAGCAGGTAAAACCTGTGCATTCATTGATGCAGAACATGCTCTCGATCCTATCTATGCTAAAAAGCTCGG
CGTAAACATTGATGAATTGTTAGTTTCTCAGCCGGATACTGGTGAGCAAGCCCTTGAGATTTGTGATGCTCTGGCTCGCT
CTGGTGCGATTGATGTGATGGTTATTGACTCTGTAGCTGCATTGACACCTAAAGCTGAAATTGAAGGTGAGATGGGCGAT
TCTCATATGGGGTTACAGGCAAGAATGTTATCCCAAGCAATGCGTAAATTAACGGGTAACCTAAAGCAATCGAACTGCAT
GGCGATATTTATTAACCAAATCCGAATGAAGATCGGCGTTATGTTCGGAAATCCGGAAACAACCACGGGCGGTAACGCTC
TAAAATTCTACGCTTCAGTTCGTCTTGATATTCGTCGCACGGGCGCTATTAAAGAAGGTGATGAGGTTGTTGGTAATGAA
ACTCGCATTAAAGTGGTAAAGAACAAAATTGCTGCGCCGTTTAAAGAAGCCAACACTCAAATTTTGTATGGAAAAGGCTT
TAACCGCTTTGGTGAGCTGATTGACCTTGGTGTTAAATGTAAGCTTGTTGAGAAAGCTGGCGCTTGGTATAGCTATAAGG
GTGACAAGATTGGTCAAGGTAAGGCCAATGCCTGTAAGTATATTGAAGAAAATAGCCACATTTCAGAAGAGTTAGATGCT
AAGTTGCGTGAGCTGTTACTAGCAACTGATACAGTTGGCGAGGAAACCGCTTCTACAGAAGTAGTGGATGGTGAAGAGTT
TTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.