Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   JOS67_RS03195 Genome accession   NZ_CP069195
Coordinates   559699..560685 (+) Length   328 a.a.
NCBI ID   WP_203346911.1    Uniprot ID   A0AA92LTA0
Organism   Vibrio diabolicus strain SLV18     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 554708..582794 559699..560685 within 0


Gene organization within MGE regions


Location: 554708..582794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOS67_RS03160 (JOS67_03155) ftsB 554708..554989 (+) 282 WP_005380907.1 cell division protein FtsB -
  JOS67_RS03165 (JOS67_03160) ispD 554991..555695 (+) 705 WP_104974803.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  JOS67_RS03170 (JOS67_03165) ispF 555713..556189 (+) 477 WP_005393886.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  JOS67_RS03175 (JOS67_03170) truD 556236..557279 (+) 1044 WP_203343650.1 tRNA pseudouridine(13) synthase TruD -
  JOS67_RS03180 (JOS67_03175) surE 557279..558055 (+) 777 WP_005393882.1 5'/3'-nucleotidase SurE -
  JOS67_RS03185 (JOS67_03180) - 558055..558681 (+) 627 WP_203343649.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  JOS67_RS03190 (JOS67_03185) - 558695..559618 (+) 924 WP_203343648.1 peptidoglycan DD-metalloendopeptidase family protein -
  JOS67_RS03195 (JOS67_03190) rpoS 559699..560685 (+) 987 WP_203346911.1 RNA polymerase sigma factor RpoS Regulator
  JOS67_RS03200 (JOS67_03195) mutS 560768..563329 (-) 2562 WP_203346912.1 DNA mismatch repair protein MutS -
  JOS67_RS03205 (JOS67_03200) pncC 563414..563896 (+) 483 WP_203346913.1 nicotinamide-nucleotide amidase -
  JOS67_RS03210 (JOS67_03205) recA 564097..564714 (+) 618 Protein_459 recombinase RecA -
  JOS67_RS03215 (JOS67_03210) recA 564902..565945 (+) 1044 WP_203346914.1 recombinase RecA Machinery gene
  JOS67_RS03220 (JOS67_03215) - 565945..568005 (+) 2061 WP_203346915.1 hypothetical protein -
  JOS67_RS03225 (JOS67_03220) - 568007..570304 (+) 2298 WP_203346916.1 tyrosine-type recombinase/integrase -
  JOS67_RS03230 (JOS67_03225) - 570304..570834 (+) 531 WP_203346917.1 hypothetical protein -
  JOS67_RS03235 (JOS67_03230) - 570847..572169 (+) 1323 WP_178310224.1 site-specific integrase -
  JOS67_RS03240 (JOS67_03235) - 572291..572947 (+) 657 WP_203346918.1 recombinase family protein -
  JOS67_RS03245 (JOS67_03240) - 573241..573846 (+) 606 WP_178310785.1 porin family protein -
  JOS67_RS03250 (JOS67_03245) - 573948..574856 (-) 909 WP_203346919.1 hypothetical protein -
  JOS67_RS03255 (JOS67_03250) - 575017..575232 (-) 216 WP_238935353.1 hypothetical protein -
  JOS67_RS03260 (JOS67_03255) - 575319..575825 (-) 507 Protein_469 chromosome partitioning protein ParB -
  JOS67_RS03265 (JOS67_03260) - 575899..577076 (+) 1178 WP_203346719.1 IS3 family transposase -
  JOS67_RS03270 (JOS67_03265) - 577085..577804 (-) 720 Protein_471 chromosome partitioning protein ParB -
  JOS67_RS03275 (JOS67_03270) - 577986..579170 (+) 1185 WP_203347248.1 hypothetical protein -
  JOS67_RS03280 (JOS67_03275) - 579243..580352 (+) 1110 WP_203346920.1 hypothetical protein -
  JOS67_RS03285 (JOS67_03280) - 580572..580904 (+) 333 WP_140054609.1 hypothetical protein -
  JOS67_RS03290 (JOS67_03285) - 581099..581443 (+) 345 WP_178310776.1 hypothetical protein -
  JOS67_RS03295 (JOS67_03290) - 581621..582442 (-) 822 WP_203346921.1 hypothetical protein -
  JOS67_RS03300 (JOS67_03295) - 582501..582794 (-) 294 WP_203346922.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 37427.33 Da        Isoelectric Point: 4.7841

>NTDB_id=532817 JOS67_RS03195 WP_203346911.1 559699..560685(+) (rpoS) [Vibrio diabolicus strain SLV18]
MSISNTVTKVEEFAFDNASVKTIDNEREKSSSTESKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide


Download         Length: 987 bp        

>NTDB_id=532817 JOS67_RS03195 WP_203346911.1 559699..560685(+) (rpoS) [Vibrio diabolicus strain SLV18]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACG
CGAAAAATCATCATCCACAGAAAGCAAAACGGCTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGACGCAACTC
AGTTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCCGAAGAAGAGGTGCTTTATGCTCGACGAGCTCTGCGT
GGCGACGAAGCGGCACGTAAACGTATGATCGAAAGTAACCTACGTTTGGTGGTCAAGATCTCTCGTCGATATAGTAATCG
CGGCCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTTGGTTTGATCCGTGCGGTCGAGAAGTTCGATCCAGAGCGTG
GTTTCCGCTTCTCTACTTATGCGACCTGGTGGATCCGACAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACGATC
CGTCTACCTATTCATGTCGTGAAAGAGCTAAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGATCACGA
ACCTACCGCAGAAGAAATTGCTGCTCAGTTAGATATTCCAGTCGAAGATGTAAGCAAAATGCTACGTCTCAATGAGCGTA
TCAGTTCTGTCGACACGCCAATCGGTGGTGACGGTGAAAAAGCGCTGTTGGATATTATTCCCGACGCAAACAACTCCGAT
CCAGAAGTCTCGACTCAAGATGACGATATCAAATCATCGCTGATTCATTGGTTAGAAGAGTTGAATCCAAAACAAAAAGA
AGTACTTGCACGACGTTTTGGTCTTCTAGGCTATGAGCCTTCGACGCTTGAAGAAGTTGGTCGAGAGATTGGTTTGACAC
GTGAGCGTGTACGTCAAATCCAAGTAGAAGGTTTACGTCGTCTTCGTGAGGTTTTAATCAAGCAAGGTTTGAATATGGAA
AACTTATTTAACGTCGAAGATGATTAA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(89-158)

Sigma-70, region 4 (Sigma70_r4)

(257-310)

Sigma-70 region 3 (Sigma70_r3)

(169-242)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(51-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

83.533

100

0.851