Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JNO58_RS09535 Genome accession   NZ_CP069168
Coordinates   2016379..2017521 (-) Length   380 a.a.
NCBI ID   WP_047673645.1    Uniprot ID   A0AAW3FNC2
Organism   Lactiplantibacillus plantarum strain CXG9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2011379..2022521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNO58_RS09525 (JNO58_09525) - 2013658..2014464 (-) 807 WP_003641506.1 TIGR00282 family metallophosphoesterase -
  JNO58_RS09530 (JNO58_09530) rny 2014589..2016148 (-) 1560 WP_003644638.1 ribonuclease Y -
  JNO58_RS09535 (JNO58_09535) recA 2016379..2017521 (-) 1143 WP_047673645.1 recombinase RecA Machinery gene
  JNO58_RS09540 (JNO58_09540) cinA 2017613..2018875 (-) 1263 WP_203283703.1 competence/damage-inducible protein A Machinery gene
  JNO58_RS09545 (JNO58_09545) pgsA 2019143..2019727 (-) 585 WP_003641502.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JNO58_RS09550 (JNO58_09550) - 2019750..2020622 (-) 873 WP_003641501.1 helix-turn-helix domain-containing protein -
  JNO58_RS09555 (JNO58_09555) yfmH 2020726..2022027 (-) 1302 WP_003644640.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 40579.87 Da        Isoelectric Point: 5.5816

>NTDB_id=532650 JNO58_RS09535 WP_047673645.1 2016379..2017521(-) (recA) [Lactiplantibacillus plantarum strain CXG9]
MADARKAALDTALKKIEKNFGKGAIMRMGDAAQTTISTISSGSLALDDALGVGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQKQGGTAAYIDAENALDPVYAEHLGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGTLNKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATIRLEVRRAEQIKEGTNIIGNR
VRIKVVKNKVAPPFKRAEVDIMYGQGISQTGEIVDMAAEKDIVKKSGSWYSYGDDRIGQGRENAKKYLDEHPDVMTEIRQ
KVRDAYGMDATGEETSETDDQAKEAKDKGTAKNGSKGQSKSTKATPAETALDLGDQPTGK

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=532650 JNO58_RS09535 WP_047673645.1 2016379..2017521(-) (recA) [Lactiplantibacillus plantarum strain CXG9]
TTGGCTGATGCACGGAAAGCAGCACTAGATACTGCCCTGAAAAAGATCGAAAAGAATTTCGGTAAAGGGGCGATTATGCG
GATGGGTGACGCTGCCCAGACGACTATTTCAACGATTTCAAGTGGATCGTTGGCCTTAGATGACGCGTTGGGTGTCGGCG
GCTACCCACGTGGTCGGATCGTGGAAATCTACGGTCCTGAAAGTTCAGGTAAAACGACCGTGGCACTACATGCGGTTGCT
GAAGTTCAAAAGCAGGGTGGTACGGCGGCCTATATCGATGCTGAAAACGCACTAGACCCCGTTTATGCGGAACACCTAGG
GGTCAACATTGATGACCTGTTACTTTCGCAACCAGATACTGGTGAACAAGGGCTTGAAATTGCGGATGCCTTAGTTTCCA
GTGGTGCGGTCGATATTTTAGTTGTTGACTCGGTGGCGGCCTTAGTGCCACGTGCCGAAATTGAAGGTGAAATGGGTGAC
GCACACGTTGGGTTACAAGCGCGGCTGATGTCACAAGCGCTCCGGAAGTTATCAGGGACATTGAACAAAACCAAGACAAT
CGCGTTATTTATCAATCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAATCCTGAAACGACTCCTGGTGGTCGGGCCT
TGAAATTTTACGCCACGATTCGTTTGGAAGTACGGCGGGCAGAACAGATCAAGGAAGGAACCAATATTATTGGTAACCGT
GTCCGGATCAAAGTCGTTAAGAACAAGGTTGCACCGCCATTTAAGCGTGCCGAAGTGGATATCATGTATGGTCAAGGTAT
CTCACAAACTGGTGAAATTGTTGATATGGCTGCTGAAAAGGATATTGTTAAGAAGAGTGGTTCTTGGTATTCATATGGTG
ACGATCGCATTGGTCAAGGCCGTGAAAATGCCAAGAAGTATTTGGACGAGCATCCTGATGTCATGACGGAGATTCGCCAA
AAGGTTCGTGATGCATACGGTATGGATGCAACTGGTGAAGAAACGTCTGAAACTGATGATCAGGCCAAAGAAGCTAAGGA
TAAGGGAACTGCTAAGAATGGCAGTAAGGGTCAAAGTAAGTCCACTAAAGCGACACCAGCGGAAACTGCTCTCGATCTCG
GCGACCAACCAACCGGAAAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

84.412

89.474

0.755
  recA Bacillus subtilis subsp. subtilis str. 168

74.699

87.368

0.653
  recA Streptococcus pneumoniae D39

64.987

99.211

0.645
  recA Streptococcus pneumoniae R6

64.987

99.211

0.645
  recA Streptococcus pneumoniae TIGR4

64.987

99.211

0.645
  recA Streptococcus pneumoniae Rx1

64.987

99.211

0.645
  recA Streptococcus mitis SK321

63.395

99.211

0.629
  recA Streptococcus mitis NCTC 12261

63.13

99.211

0.626
  recA Streptococcus pyogenes NZ131

66.289

92.895

0.616
  recA Streptococcus mutans UA159

65.634

93.421

0.613
  recA Lactococcus lactis subsp. cremoris KW2

69.207

86.316

0.597
  recA Ralstonia pseudosolanacearum GMI1000

61.337

90.526

0.555
  recA Neisseria gonorrhoeae MS11

60.231

91.316

0.55
  recA Neisseria gonorrhoeae MS11

60.231

91.316

0.55
  recA Neisseria gonorrhoeae strain FA1090

60.231

91.316

0.55
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.884

90.526

0.542
  recA Vibrio cholerae strain A1552

59.884

90.526

0.542
  recA Acinetobacter baylyi ADP1

59.13

90.789

0.537
  recA Pseudomonas stutzeri DSM 10701

62.539

85

0.532
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.154

85.526

0.532
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.681

90.789

0.524
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.061

86.316

0.518
  recA Helicobacter pylori 26695

57.185

89.737

0.513
  recA Helicobacter pylori strain NCTC11637

57.185

89.737

0.513
  recA Acinetobacter baumannii D1279779

59.877

85.263

0.511
  recA Glaesserella parasuis strain SC1401

60.248

84.737

0.511