Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   JNO58_RS09540 Genome accession   NZ_CP069168
Coordinates   2017613..2018875 (-) Length   420 a.a.
NCBI ID   WP_203283703.1    Uniprot ID   -
Organism   Lactiplantibacillus plantarum strain CXG9     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2012613..2023875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNO58_RS09525 (JNO58_09525) - 2013658..2014464 (-) 807 WP_003641506.1 TIGR00282 family metallophosphoesterase -
  JNO58_RS09530 (JNO58_09530) rny 2014589..2016148 (-) 1560 WP_003644638.1 ribonuclease Y -
  JNO58_RS09535 (JNO58_09535) recA 2016379..2017521 (-) 1143 WP_047673645.1 recombinase RecA Machinery gene
  JNO58_RS09540 (JNO58_09540) cinA 2017613..2018875 (-) 1263 WP_203283703.1 competence/damage-inducible protein A Machinery gene
  JNO58_RS09545 (JNO58_09545) pgsA 2019143..2019727 (-) 585 WP_003641502.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JNO58_RS09550 (JNO58_09550) - 2019750..2020622 (-) 873 WP_003641501.1 helix-turn-helix domain-containing protein -
  JNO58_RS09555 (JNO58_09555) yfmH 2020726..2022027 (-) 1302 WP_003644640.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  JNO58_RS09560 (JNO58_09560) yfmF 2022024..2023289 (-) 1266 WP_024002506.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45106.15 Da        Isoelectric Point: 5.4407

>NTDB_id=532651 JNO58_RS09540 WP_203283703.1 2017613..2018875(-) (cinA) [Lactiplantibacillus plantarum strain CXG9]
MQAEIIAGGTEILLGQITNTNSTYIARGLAELGIDSYYQTVVGDNRQRLSTVIEIAAQRNDLVILTGGLGPTKDDLTKQT
LAHYLNVALVEDQAAMQKITAWFATNDKVMTANNRLQALYPAGAQPLTNHNGMAVGAFYQSENSADFLLLPGPPRELAVM
FDSEAKPKLAAAYGEQAQIYSRVMRFYGISESELATRLQPLIDEQQAVTIAPYAKTNEVTLRLSAQAMTETAARGMIDKV
DHQIKATVGPYFYGYGDDNSLVTTVINQMIAAKLSITAAESLTAGLFQSTIGSVSGVSAIFPGGFVTYANEAKHQLVNVP
QAIIDAEGVVSEATAKAMASGAKQQLNTDVGISFTGVAGPGTLEGQPAGTVWIGLAYRDRPVKAKQYHFAGNRQQIRERS
VMAGLDLLRHALNEDTDLKK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=532651 JNO58_RS09540 WP_203283703.1 2017613..2018875(-) (cinA) [Lactiplantibacillus plantarum strain CXG9]
ATGCAAGCAGAAATAATCGCGGGTGGTACCGAGATTTTACTGGGTCAGATTACGAACACGAACAGTACGTACATCGCACG
TGGATTGGCCGAATTAGGAATTGATAGCTATTATCAAACGGTGGTTGGTGATAATCGGCAACGTTTGTCGACCGTCATTG
AAATTGCGGCCCAGCGGAATGACTTAGTTATTTTAACGGGTGGTTTGGGGCCGACCAAGGATGACTTGACGAAGCAGACG
CTCGCGCATTATTTGAATGTTGCCTTGGTTGAAGATCAGGCAGCAATGCAAAAAATTACGGCCTGGTTTGCCACTAATGA
CAAAGTAATGACGGCCAACAACCGATTACAGGCATTGTATCCGGCAGGCGCGCAACCGTTGACTAATCATAACGGAATGG
CTGTTGGTGCGTTTTATCAGTCAGAAAATAGTGCTGATTTCTTGTTATTGCCAGGTCCACCCCGTGAGTTAGCCGTAATG
TTTGATTCTGAGGCAAAACCGAAATTGGCAGCTGCATATGGGGAACAAGCCCAAATCTATTCGCGAGTGATGCGTTTTTA
TGGCATCAGTGAGTCTGAATTGGCGACCCGGTTGCAACCCTTGATTGATGAACAGCAGGCGGTTACGATCGCACCCTATG
CCAAGACTAACGAGGTTACCCTCAGATTGAGTGCCCAAGCTATGACGGAAACGGCTGCAAGGGGAATGATCGACAAAGTT
GACCACCAGATCAAGGCTACCGTTGGGCCGTACTTTTACGGTTATGGAGACGATAACTCGTTAGTTACTACTGTTATTAA
TCAAATGATTGCGGCTAAGCTGAGTATTACAGCCGCGGAAAGCTTAACAGCTGGGCTGTTTCAGAGTACCATCGGCAGTG
TGTCCGGGGTTTCCGCAATCTTTCCGGGCGGCTTTGTAACGTATGCGAATGAGGCCAAACATCAGCTAGTGAACGTTCCA
CAAGCAATTATTGACGCTGAGGGCGTGGTTTCAGAAGCGACCGCTAAGGCCATGGCGAGTGGTGCTAAGCAGCAGCTAAA
TACTGATGTTGGTATCAGTTTTACAGGCGTTGCCGGTCCAGGAACCTTGGAAGGTCAACCGGCTGGAACGGTATGGATTG
GTCTTGCTTACCGTGATCGACCCGTGAAGGCCAAGCAGTACCATTTTGCTGGTAATCGACAACAAATCCGGGAACGCAGT
GTGATGGCCGGGTTAGACCTATTGAGACATGCATTGAATGAAGATACGGACTTAAAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(260-411)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

48.113

100

0.486
  cinA Streptococcus pneumoniae TIGR4

47.877

100

0.483
  cinA Streptococcus pneumoniae Rx1

47.877

100

0.483
  cinA Streptococcus pneumoniae R6

47.877

100

0.483
  cinA Streptococcus pneumoniae D39

47.642

100

0.481
  cinA Streptococcus mitis NCTC 12261

46.934

100

0.474
  cinA Streptococcus mutans UA159

47.47

98.81

0.469
  cinA Bacillus subtilis subsp. subtilis str. 168

44.31

98.333

0.436
  cinA Streptococcus suis isolate S10

39.183

99.048

0.388