Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JNE38_RS17510 Genome accession   NZ_CP069127
Coordinates   3475649..3476707 (-) Length   352 a.a.
NCBI ID   WP_203254933.1    Uniprot ID   -
Organism   Brevibacillus choshinensis strain HPD31-SP3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3470649..3481707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE38_RS17485 (JNE38_17485) - 3470805..3471743 (-) 939 WP_203254929.1 dipeptidase -
  JNE38_RS17490 (JNE38_17490) spoVS 3471834..3472094 (-) 261 WP_003385776.1 stage V sporulation protein SpoVS -
  JNE38_RS17495 (JNE38_17495) - 3472212..3473006 (-) 795 WP_203254930.1 TIGR00282 family metallophosphoesterase -
  JNE38_RS17500 (JNE38_17500) rny 3473112..3474653 (-) 1542 WP_203254931.1 ribonuclease Y -
  JNE38_RS17505 (JNE38_17505) - 3474932..3475579 (-) 648 WP_203254932.1 RecX family transcriptional regulator -
  JNE38_RS17510 (JNE38_17510) recA 3475649..3476707 (-) 1059 WP_203254933.1 recombinase RecA Machinery gene
  JNE38_RS17515 (JNE38_17515) - 3476878..3478467 (-) 1590 WP_203254934.1 DEAD/DEAH box helicase -
  JNE38_RS17520 (JNE38_17520) cinA 3478475..3479719 (-) 1245 WP_203254935.1 competence/damage-inducible protein A Machinery gene
  JNE38_RS17525 (JNE38_17525) pgsA 3479838..3480413 (-) 576 WP_203254936.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37779.12 Da        Isoelectric Point: 4.9005

>NTDB_id=532438 JNE38_RS17510 WP_203254933.1 3475649..3476707(-) (recA) [Brevibacillus choshinensis strain HPD31-SP3]
MSDRRAALESALRQIEKQFGKGSIMKLGEVANVQISTVSSGALALDIALGVGGFPRGRIVEIYGPESSGKTTVALHAIAE
VQKQGGQAAFIDAEHALDPVYAAKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRKAESIKVGNDILGSKT
KIKVVKNKVAPPFKVAEVDIMYGEGISREGSILDIGSEIDVVLKSGAWYSFNEERLGQGRENSKIYLKENPHVAAQIETK
VREYFSLNPGSIPEAEAVIDPEQDEEPTFDLE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=532438 JNE38_RS17510 WP_203254933.1 3475649..3476707(-) (recA) [Brevibacillus choshinensis strain HPD31-SP3]
TTGTCAGATCGTCGCGCAGCTTTGGAAAGTGCTTTGCGTCAAATAGAAAAACAGTTCGGAAAAGGTTCCATCATGAAGTT
GGGGGAAGTAGCCAACGTTCAAATTTCTACCGTATCCAGTGGAGCGCTTGCTCTTGATATCGCTCTCGGAGTTGGTGGAT
TCCCACGCGGACGGATTGTTGAGATCTACGGTCCTGAGTCTTCTGGTAAAACCACAGTTGCACTTCATGCGATCGCGGAA
GTACAAAAACAAGGCGGACAAGCTGCCTTTATCGATGCGGAGCACGCACTGGACCCTGTGTACGCTGCCAAGCTGGGTGT
GAATATCGATGAGCTGCTGTTGTCCCAGCCTGATACAGGTGAGCAAGCTCTCGAAATCGCCGAAGCGCTGGTTCGCTCGG
GCGCTGTAGATATTATCGTAGTTGACTCGGTAGCAGCACTGGTGCCGAAAGCGGAGATCGAGGGTGAGATGGGTGATTCT
CACGTTGGTCTGCAGGCTCGTCTGATGTCCCAGGCTCTGCGCAAGCTGTCTGGTGCGATCAACAAGTCCAAGACGATTGC
GATCTTCATCAACCAGCTTCGTGAAAAAGTAGGGGTCATGTTCGGTAACCCGGAAACCACTCCAGGTGGACGCGCCCTCA
AGTTCTACGCGAGCGTTCGCTTGGATGTTCGTAAAGCTGAGTCCATCAAAGTGGGCAATGACATCTTGGGAAGCAAGACC
AAGATCAAAGTCGTGAAAAATAAAGTGGCTCCACCGTTCAAGGTTGCGGAAGTTGACATCATGTACGGTGAAGGGATCTC
CAGGGAAGGTAGCATCCTCGACATTGGTTCTGAGATTGATGTGGTACTGAAGAGCGGAGCATGGTACTCCTTCAATGAAG
AGCGCCTCGGACAGGGTCGTGAAAATTCAAAAATTTACCTGAAAGAGAACCCGCACGTTGCTGCCCAAATTGAAACAAAG
GTCCGCGAGTATTTCAGTCTCAATCCTGGCTCTATTCCGGAAGCAGAAGCAGTCATCGATCCTGAGCAGGACGAAGAACC
GACTTTTGATTTAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.402

93.182

0.759
  recA Latilactobacillus sakei subsp. sakei 23K

72.892

94.318

0.688
  recA Streptococcus mitis SK321

67.409

100

0.687
  recA Streptococcus mitis NCTC 12261

67.318

100

0.685
  recA Streptococcus pyogenes NZ131

66.949

100

0.673
  recA Streptococcus pneumoniae D39

69.67

94.602

0.659
  recA Streptococcus pneumoniae Rx1

69.67

94.602

0.659
  recA Streptococcus pneumoniae R6

69.67

94.602

0.659
  recA Streptococcus pneumoniae TIGR4

69.67

94.602

0.659
  recA Lactococcus lactis subsp. cremoris KW2

70

93.75

0.656
  recA Streptococcus mutans UA159

65.254

100

0.656
  recA Ralstonia pseudosolanacearum GMI1000

67.077

92.33

0.619
  recA Neisseria gonorrhoeae MS11

62.428

98.295

0.614
  recA Neisseria gonorrhoeae MS11

62.428

98.295

0.614
  recA Neisseria gonorrhoeae strain FA1090

62.428

98.295

0.614
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.443

92.898

0.608
  recA Vibrio cholerae strain A1552

65.443

92.898

0.608
  recA Glaesserella parasuis strain SC1401

63.772

94.886

0.605
  recA Acinetobacter baumannii D1279779

60.286

99.432

0.599
  recA Pseudomonas stutzeri DSM 10701

60.641

97.443

0.591
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.71

98.011

0.585
  recA Acinetobacter baylyi ADP1

62.883

92.614

0.582
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.774

92.898

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.5

90.909

0.568
  recA Helicobacter pylori 26695

59.639

94.318

0.563
  recA Helicobacter pylori strain NCTC11637

59.337

94.318

0.56