Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   JNE38_RS17520 Genome accession   NZ_CP069127
Coordinates   3478475..3479719 (-) Length   414 a.a.
NCBI ID   WP_203254935.1    Uniprot ID   -
Organism   Brevibacillus choshinensis strain HPD31-SP3     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3473475..3484719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE38_RS17505 (JNE38_17505) - 3474932..3475579 (-) 648 WP_203254932.1 RecX family transcriptional regulator -
  JNE38_RS17510 (JNE38_17510) recA 3475649..3476707 (-) 1059 WP_203254933.1 recombinase RecA Machinery gene
  JNE38_RS17515 (JNE38_17515) - 3476878..3478467 (-) 1590 WP_203254934.1 DEAD/DEAH box helicase -
  JNE38_RS17520 (JNE38_17520) cinA 3478475..3479719 (-) 1245 WP_203254935.1 competence/damage-inducible protein A Machinery gene
  JNE38_RS17525 (JNE38_17525) pgsA 3479838..3480413 (-) 576 WP_203254936.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JNE38_RS17530 (JNE38_17530) rimO 3480414..3481760 (-) 1347 WP_203357618.1 30S ribosomal protein S12 methylthiotransferase RimO -
  JNE38_RS17535 (JNE38_17535) - 3481872..3482777 (-) 906 WP_203254937.1 RodZ domain-containing protein -
  JNE38_RS17540 (JNE38_17540) - 3482790..3483569 (-) 780 WP_203254938.1 YmfK family protein -
  JNE38_RS17545 (JNE38_17545) - 3483676..3483945 (-) 270 WP_203254939.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44779.30 Da        Isoelectric Point: 4.9054

>NTDB_id=532439 JNE38_RS17520 WP_203254935.1 3478475..3479719(-) (cinA) [Brevibacillus choshinensis strain HPD31-SP3]
MRAEIIAVGTELLLGQIANTNAQFLSQKLAEIGVGVYFHTVVGDNTERLLQVIRLAAQRSDLVIFSGGLGPTQDDLTKET
VAEHVGVGLVTDSPAMQRIEDFFLQRGIVMTENNRKQALVLEGSHVFSNDFGMAPGMAVRHDSTTFVLLPGPPSELYPMV
ERYVMPYLVNLLPERQVFHSRVFRFYGIGESALEEKLIDLIEMQDNPTIAPYAKEFEVTLRVTARAASAVEGEALILPVE
KEIRDRVGQYIYGTGEDSSLHEVLVTELIKRNETIACAESCTGGTVASLITSVPGSSSAFHGGVVCYTNEVKNQVLGVPA
EVLETDGAVSEKTAQLLAENVRAKLGTTYGISVTGVAGPDPSEGKPVGLVYVGIAAEGLPTVVKELRLAGRRQAIVGRAA
KFALFYALQMQKER

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=532439 JNE38_RS17520 WP_203254935.1 3478475..3479719(-) (cinA) [Brevibacillus choshinensis strain HPD31-SP3]
ATGAGAGCGGAGATTATCGCGGTGGGGACCGAGCTTTTGTTGGGTCAAATTGCGAATACAAATGCGCAGTTTCTATCGCA
AAAACTTGCTGAGATCGGTGTAGGGGTGTATTTCCACACGGTTGTGGGCGATAATACGGAGCGGCTGTTGCAAGTGATTC
GGTTGGCTGCGCAGCGGTCCGATCTGGTCATCTTTTCCGGTGGATTGGGTCCTACCCAGGATGATCTGACCAAGGAAACG
GTAGCCGAACACGTCGGCGTTGGTTTGGTAACGGATTCACCGGCCATGCAGCGTATTGAAGACTTCTTTTTACAACGTGG
CATTGTCATGACGGAGAACAACCGAAAGCAGGCCCTTGTTTTGGAAGGGAGCCATGTGTTTTCCAACGACTTCGGGATGG
CGCCTGGGATGGCGGTCCGTCATGACAGTACTACGTTCGTACTCTTGCCTGGCCCGCCGAGCGAGCTGTATCCCATGGTA
GAACGTTACGTGATGCCTTATCTGGTGAATCTGCTGCCAGAGCGGCAGGTGTTTCATTCCCGGGTGTTCCGTTTTTACGG
AATAGGGGAGTCGGCATTGGAGGAAAAACTGATCGATTTGATCGAAATGCAGGATAATCCAACGATTGCCCCATACGCCA
AGGAATTCGAAGTCACGCTGCGTGTAACCGCGAGAGCAGCGTCTGCGGTCGAAGGCGAAGCGTTGATACTGCCTGTGGAA
AAAGAGATTCGCGACCGGGTCGGCCAGTATATTTACGGCACGGGCGAAGATTCCTCGCTGCATGAGGTGCTCGTCACAGA
ACTGATCAAAAGGAATGAGACGATCGCTTGTGCGGAAAGCTGCACAGGTGGTACGGTAGCCTCCTTGATTACGTCTGTTC
CGGGTAGCTCCTCCGCTTTTCATGGCGGTGTAGTCTGCTACACAAACGAAGTCAAGAATCAAGTGCTGGGAGTCCCCGCA
GAAGTACTGGAAACAGATGGCGCTGTCAGTGAAAAAACAGCCCAGCTGCTGGCTGAAAATGTAAGAGCAAAACTGGGAAC
GACATACGGAATCTCAGTCACGGGTGTGGCAGGACCCGACCCTTCCGAGGGCAAGCCTGTCGGGTTGGTCTATGTCGGTA
TCGCGGCGGAAGGTCTGCCGACGGTGGTGAAAGAGCTGCGACTTGCGGGAAGACGGCAGGCAATCGTTGGCCGCGCCGCC
AAATTCGCGCTGTTTTACGCGCTGCAAATGCAAAAAGAAAGGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(259-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

52.785

99.758

0.527
  cinA Streptococcus mitis SK321

47.942

99.758

0.478
  cinA Streptococcus pneumoniae TIGR4

47.942

99.758

0.478
  cinA Streptococcus mitis NCTC 12261

47.7

99.758

0.476
  cinA Streptococcus pneumoniae Rx1

47.7

99.758

0.476
  cinA Streptococcus pneumoniae R6

47.7

99.758

0.476
  cinA Streptococcus pneumoniae D39

47.458

99.758

0.473
  cinA Streptococcus mutans UA159

46.115

96.377

0.444
  cinA Streptococcus suis isolate S10

41.519

95.411

0.396