Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I6I77_RS03680 Genome accession   NZ_CP068132
Coordinates   709627..710670 (-) Length   347 a.a.
NCBI ID   WP_060791692.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain FDAARGOS_1120     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 704627..715670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I77_RS03665 (I6I77_03660) pgmB 706090..706740 (+) 651 WP_005232889.1 beta-phosphoglucomutase -
  I6I77_RS03670 (I6I77_03665) treR 706795..707511 (+) 717 WP_005226457.1 trehalose operon repressor -
  I6I77_RS03675 (I6I77_03670) rny 707810..709384 (-) 1575 WP_005232891.1 ribonuclease Y -
  I6I77_RS03680 (I6I77_03675) recA 709627..710670 (-) 1044 WP_060791692.1 recombinase RecA Machinery gene
  I6I77_RS03685 (I6I77_03680) cinA 710773..712011 (-) 1239 WP_060791693.1 competence/damage-inducible protein A Machinery gene
  I6I77_RS03690 (I6I77_03685) pgsA 712139..712720 (-) 582 WP_005226440.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I6I77_RS03695 (I6I77_03690) - 712853..713755 (-) 903 WP_016608952.1 helix-turn-helix domain-containing protein -
  I6I77_RS03700 (I6I77_03695) yfmH 714220..715518 (-) 1299 WP_060791694.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37429.60 Da        Isoelectric Point: 4.8221

>NTDB_id=527338 I6I77_RS03680 WP_060791692.1 709627..710670(-) (recA) [Enterococcus casseliflavus strain FDAARGOS_1120]
MADDRKAALDAALKKIEKNYGKGAIMKLGEKVDQQISTIPSGSLALDVALGVGGYPRGRIVEVYGPESSGKTTVALHAIA
EVQKNGGTAAFIDAEHALDPQYAQKLGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGD
THVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQLKSGTDIIGNR
TKIKVVKNKVAPPFKVAEVDMMYGQGISQEGELLDMAVEQDIVDKSGAWYAYKGDRIGQGRENAKNYMREHEEMMLEVSA
RVRDAYGIGTGETVTLEEAQEELPLDD

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=527338 I6I77_RS03680 WP_060791692.1 709627..710670(-) (recA) [Enterococcus casseliflavus strain FDAARGOS_1120]
TTGGCAGATGATCGTAAAGCAGCCTTAGATGCTGCACTAAAGAAGATTGAAAAGAACTATGGTAAAGGTGCCATCATGAA
GCTTGGCGAAAAAGTTGATCAACAAATTTCAACGATCCCAAGTGGTTCATTGGCCTTGGATGTTGCATTAGGTGTAGGTG
GTTACCCACGAGGACGGATCGTAGAAGTTTACGGCCCAGAAAGTTCTGGTAAAACGACAGTTGCTTTACATGCCATTGCG
GAAGTCCAAAAAAATGGCGGAACAGCAGCATTTATCGATGCCGAACATGCGTTAGATCCTCAATATGCGCAAAAATTAGG
CGTAAATATCGATGATCTTTTGTTATCACAACCAGATACAGGAGAACAAGGATTAGAGATCGCTGACGCCTTAGTTTCAA
GTGGTGCGGTTGATATCGTGGTCATTGACTCGGTAGCAGCTTTAGTCCCACGGGCGGAGATCGACGGTGAAATGGGTGAT
ACCCACGTTGGTTTGCAAGCTCGTTTGATGTCACAAGCATTACGGAAACTTTCTGGTTCCATCAACAAAACGAAAACGAT
CGCGATCTTTATCAACCAAATTCGGGAAAAAGTTGGGATCATGTTCGGGAATCCAGAAACGACGCCTGGTGGTCGTGCGT
TGAAATTCTATTCAACCATCCGTTTGGAAGTACGTCGTGCTGAGCAATTGAAATCCGGTACAGATATCATCGGGAACCGC
ACGAAGATCAAAGTAGTCAAAAACAAAGTAGCGCCACCATTTAAAGTAGCAGAAGTCGACATGATGTATGGTCAAGGGAT
TTCCCAAGAAGGCGAATTGCTGGATATGGCCGTGGAACAAGACATCGTCGATAAAAGCGGTGCGTGGTATGCCTATAAAG
GGGATCGTATCGGTCAAGGTCGTGAAAACGCCAAAAACTACATGCGTGAACACGAAGAAATGATGCTAGAAGTTTCTGCT
CGCGTCCGCGATGCTTACGGGATTGGAACAGGAGAGACCGTAACCCTTGAGGAAGCGCAAGAAGAATTACCATTAGACGA
CTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

82.209

93.948

0.772
  recA Bacillus subtilis subsp. subtilis str. 168

77.846

93.66

0.729
  recA Streptococcus pneumoniae D39

65

100

0.674
  recA Streptococcus pneumoniae R6

65

100

0.674
  recA Streptococcus pneumoniae TIGR4

65

100

0.674
  recA Streptococcus pneumoniae Rx1

65

100

0.674
  recA Streptococcus mutans UA159

68.769

95.965

0.66
  recA Streptococcus mitis NCTC 12261

65.706

100

0.657
  recA Streptococcus pyogenes NZ131

68.58

95.389

0.654
  recA Streptococcus mitis SK321

67.868

95.965

0.651
  recA Lactococcus lactis subsp. cremoris KW2

68.085

94.813

0.646
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.918

94.813

0.597
  recA Ralstonia pseudosolanacearum GMI1000

62.691

94.236

0.591
  recA Neisseria gonorrhoeae strain FA1090

62.006

94.813

0.588
  recA Neisseria gonorrhoeae MS11

62.006

94.813

0.588
  recA Neisseria gonorrhoeae MS11

62.006

94.813

0.588
  recA Acinetobacter baumannii D1279779

58.772

98.559

0.579
  recA Acinetobacter baylyi ADP1

58.43

99.135

0.579
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.79

94.813

0.576
  recA Pseudomonas stutzeri DSM 10701

61.3

93.084

0.571
  recA Vibrio cholerae strain A1552

60.185

93.372

0.562
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.185

93.372

0.562
  recA Helicobacter pylori 26695

58.896

93.948

0.553
  recA Helicobacter pylori strain NCTC11637

58.896

93.948

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.077

93.66

0.553
  recA Glaesserella parasuis strain SC1401

59.627

92.795

0.553