Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   I6I77_RS03685 Genome accession   NZ_CP068132
Coordinates   710773..712011 (-) Length   412 a.a.
NCBI ID   WP_060791693.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain FDAARGOS_1120     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 705773..717011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I77_RS03665 (I6I77_03660) pgmB 706090..706740 (+) 651 WP_005232889.1 beta-phosphoglucomutase -
  I6I77_RS03670 (I6I77_03665) treR 706795..707511 (+) 717 WP_005226457.1 trehalose operon repressor -
  I6I77_RS03675 (I6I77_03670) rny 707810..709384 (-) 1575 WP_005232891.1 ribonuclease Y -
  I6I77_RS03680 (I6I77_03675) recA 709627..710670 (-) 1044 WP_060791692.1 recombinase RecA Machinery gene
  I6I77_RS03685 (I6I77_03680) cinA 710773..712011 (-) 1239 WP_060791693.1 competence/damage-inducible protein A Machinery gene
  I6I77_RS03690 (I6I77_03685) pgsA 712139..712720 (-) 582 WP_005226440.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I6I77_RS03695 (I6I77_03690) - 712853..713755 (-) 903 WP_016608952.1 helix-turn-helix domain-containing protein -
  I6I77_RS03700 (I6I77_03695) yfmH 714220..715518 (-) 1299 WP_060791694.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  I6I77_RS03705 (I6I77_03700) yfmF 715511..716779 (-) 1269 WP_060791695.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44856.97 Da        Isoelectric Point: 4.6995

>NTDB_id=527339 I6I77_RS03685 WP_060791693.1 710773..712011(-) (cinA) [Enterococcus casseliflavus strain FDAARGOS_1120]
MKAEIIAVGTELLLGQVVNTNATFLSEELASLGIDVFYHSVVGDNPNRLEELLTIADKRSDLIVLCGGLGPTDDDLTKQV
TARHVGQELVRDEPGYHQLKAFFENSQRRMTENNLRQTLVFKDSVSLPNPNGLAIGIFYQTAATSYLLLPGPPSELQAMF
LTHAKPLLLEQFPQEEVLLSRVLRYYGIGESALVTELADLIENQVNPTIAPYAKPNEVTLRLTVKTANEAQGIKQLDALE
ETVQARVGAYFYGYGEQNSLAETVVERLIEKKKTVTAAESLTAGLFQATLGGIPGVSEVFPGGFVTYSAATKSKLLGIDP
GLLESYGTVSQECAEAMAVYARKQAETDYAVAFTGVAGPDELEGQPKGTVWIALASDKGVSSQLYHFNRDRAYIRHSAVM
AGLNQIRKELLN

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=527339 I6I77_RS03685 WP_060791693.1 710773..712011(-) (cinA) [Enterococcus casseliflavus strain FDAARGOS_1120]
ATGAAAGCAGAAATTATTGCAGTCGGGACCGAATTACTTTTAGGACAGGTGGTGAATACGAACGCGACCTTCTTGTCAGA
AGAACTGGCAAGTCTTGGGATCGATGTTTTTTATCATAGTGTTGTCGGGGACAACCCCAATCGCTTAGAAGAATTGCTGA
CGATCGCCGACAAACGCAGCGACTTGATCGTATTGTGCGGCGGCTTAGGGCCCACCGACGATGACTTGACGAAACAAGTC
ACTGCCCGTCATGTGGGACAAGAGTTAGTCAGAGATGAACCAGGGTATCACCAATTGAAAGCCTTCTTCGAAAACAGTCA
ACGGAGGATGACGGAAAACAATTTGCGGCAGACCCTCGTTTTTAAAGACAGTGTGTCTTTGCCAAATCCCAATGGACTAG
CGATCGGGATCTTTTATCAGACAGCCGCTACCAGTTATTTGCTGCTGCCAGGACCACCAAGTGAACTACAGGCGATGTTT
CTTACCCACGCAAAACCACTTCTGTTAGAGCAGTTTCCCCAAGAAGAGGTCTTGCTGTCTCGCGTTTTGCGCTATTACGG
GATCGGGGAATCGGCATTGGTCACAGAATTGGCCGATTTGATCGAGAATCAAGTCAATCCCACCATCGCTCCTTATGCCA
AACCCAATGAGGTCACGCTGCGTCTGACGGTCAAAACTGCAAACGAGGCGCAAGGGATCAAACAATTGGATGCGTTAGAA
GAAACCGTCCAAGCACGGGTCGGTGCGTATTTCTATGGGTATGGGGAACAAAATTCGCTGGCAGAAACAGTCGTCGAGCG
ACTGATCGAGAAAAAGAAAACCGTCACCGCAGCGGAAAGTTTGACCGCTGGTTTGTTCCAAGCGACCCTAGGAGGGATTC
CTGGCGTCTCTGAGGTGTTTCCCGGTGGGTTCGTGACATATTCTGCTGCAACAAAAAGCAAGCTCTTAGGCATCGATCCA
GGGCTTTTGGAAAGCTATGGGACTGTTAGTCAGGAGTGTGCGGAAGCAATGGCCGTCTATGCCCGCAAACAAGCCGAGAC
CGATTATGCGGTGGCGTTTACGGGTGTTGCTGGTCCAGACGAGTTAGAAGGTCAGCCTAAAGGCACCGTTTGGATCGCCT
TAGCTTCTGACAAAGGCGTCTCGAGCCAGCTATATCACTTCAACCGCGACCGCGCCTATATTCGGCATAGTGCTGTCATG
GCGGGCTTAAATCAAATACGTAAGGAATTATTAAATTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

50.591

100

0.519
  cinA Streptococcus mitis SK321

50.355

100

0.517
  cinA Streptococcus pneumoniae D39

50.355

100

0.517
  cinA Streptococcus pneumoniae Rx1

50.355

100

0.517
  cinA Streptococcus pneumoniae R6

50.355

100

0.517
  cinA Streptococcus mitis NCTC 12261

49.882

100

0.512
  cinA Streptococcus mutans UA159

50

100

0.505
  cinA Bacillus subtilis subsp. subtilis str. 168

44.988

99.272

0.447
  cinA Streptococcus suis isolate S10

43.478

100

0.437