Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JJN14_RS08855 Genome accession   NZ_CP067992
Coordinates   1808127..1809281 (-) Length   384 a.a.
NCBI ID   WP_201058459.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V7-A3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1803127..1814281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN14_RS08835 (JJN14_08835) - 1804447..1804917 (-) 471 WP_201058457.1 MarR family winged helix-turn-helix transcriptional regulator -
  JJN14_RS08840 (JJN14_08840) - 1805132..1805773 (+) 642 WP_201059157.1 DUF4190 domain-containing protein -
  JJN14_RS08845 (JJN14_08845) - 1805829..1806545 (-) 717 WP_000532877.1 YebC/PmpR family DNA-binding transcriptional regulator -
  JJN14_RS08850 (JJN14_08850) - 1806642..1808012 (-) 1371 WP_201058458.1 MATE family efflux transporter -
  JJN14_RS08855 (JJN14_08855) recA 1808127..1809281 (-) 1155 WP_201058459.1 recombinase RecA Machinery gene
  JJN14_RS08860 (JJN14_08860) cinA 1809336..1810592 (-) 1257 WP_201058460.1 competence/damage-inducible protein A Machinery gene
  JJN14_RS08865 (JJN14_08865) brpA 1810660..1811697 (-) 1038 WP_049487428.1 biofilm formation/cell division transcriptional regulator BrpA -
  JJN14_RS08870 (JJN14_08870) - 1811705..1812223 (-) 519 WP_201058461.1 GNAT family N-acetyltransferase -
  JJN14_RS08875 (JJN14_08875) tsaE 1812213..1812656 (-) 444 WP_201058462.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  JJN14_RS08880 (JJN14_08880) comM 1812751..1813383 (-) 633 WP_236253691.1 competence protein Regulator
  JJN14_RS08885 (JJN14_08885) ndk 1813514..1813936 (-) 423 WP_049552313.1 nucleoside-diphosphate kinase -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41318.99 Da        Isoelectric Point: 4.7523

>NTDB_id=526177 JJN14_RS08855 WP_201058459.1 1808127..1809281(-) (recA) [Streptococcus mitis strain S022-V7-A3]
MAKKPKKLDEISKKFGAEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
STQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSE
NAKKYLADNPEVFDEIDHQVRVQFGLIDGEEVTESKKDEAVQADSVNEEVTLDLGDELEIEIEE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=526177 JJN14_RS08855 WP_201058459.1 1808127..1809281(-) (recA) [Streptococcus mitis strain S022-V7-A3]
ATGGCGAAAAAACCAAAAAAATTAGATGAAATTTCAAAAAAATTCGGGGCTGAACGTGAAAAAGCCTTGAATGACGCTCT
TAAACTGATTGAGAAAGACTTTGGTAAAGGATCAATCATGCGTTTGGGTGAACGTGCCGAGCAAAAGGTGCAAGTGATGA
GCTCAGGTTCTTTGGCTCTTGACATTGCCCTTGGTTCAGGTGGTTATCCTAAGGGACGTATCATTGAAATCTATGGACCA
GAGTCATCTGGTAAGACAACGGTTGCCCTTCATGCAGTTGCGCAAGCGCAAAAAGAAGGTGGGATTGCAGCCTTTATTGA
TGCGGAGCATGCACTTGATCCAGCTTATGCTGCGGCTCTTGGGGTCAATATTGACGAATTGCTCTTGTCTCAACCAGACT
CAGGAGAGCAAGGTCTTGAGATTGCAGGAAAGTTGATTGACTCAGGTGCAGTTGACCTTGTCGTGGTCGACTCAGTTGCT
GCCCTTGTACCTCGTGCTGAAATTGATGGAGATATCGGAGATAGCCACGTTGGTTTGCAGGCTCGTATGATGAGCCAGGC
TATGCGTAAACTTGGTGCTTCTATCAATAAAACCAAAACAATTGCCATTTTTATCAACCAATTACGTGAAAAAGTTGGGG
TCATGTTTGGAAATCCAGAAACAACTCCTGGTGGACGTGCTCTGAAATTCTACGCTTCAGTGCGTTTGGATGTTCGTGGA
AGCACACAAATCAAGGGAACTGGTGACCAGAAAGACACCAATGTCGGTAAAGAAACTAAGATTAAGGTCGTGAAAAACAA
GGTGGCTCCACCATTTAAGGAAGCCTTCGTTGAAATCATGTATGGAGAAGGTATTTCTAAGACTGGTGAGCTTTTGAAGA
TCGCAAGCGATTTGGATATCATCAAAAAAGCAGGAGCTTGGTATTCTTACAAGGATGAGAAAATCGGGCAAGGTTCTGAA
AATGCTAAGAAATACTTAGCAGATAATCCAGAAGTCTTTGATGAGATTGATCATCAAGTCCGTGTTCAATTCGGCTTGAT
TGATGGAGAAGAAGTTACTGAAAGCAAAAAAGATGAAGCAGTTCAAGCAGATTCTGTAAATGAAGAAGTAACTCTTGACC
TAGGCGACGAACTTGAAATCGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

98.698

100

0.987
  recA Streptococcus mitis SK321

98.438

100

0.984
  recA Streptococcus pneumoniae R6

94.33

100

0.953
  recA Streptococcus pneumoniae TIGR4

94.33

100

0.953
  recA Streptococcus pneumoniae Rx1

94.33

100

0.953
  recA Streptococcus pneumoniae D39

94.33

100

0.953
  recA Streptococcus pyogenes NZ131

84.514

99.219

0.839
  recA Streptococcus mutans UA159

84.031

99.479

0.836
  recA Lactococcus lactis subsp. cremoris KW2

79.202

91.406

0.724
  recA Latilactobacillus sakei subsp. sakei 23K

67.919

90.104

0.612
  recA Bacillus subtilis subsp. subtilis str. 168

68.485

85.938

0.589
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.396

84.115

0.542
  recA Glaesserella parasuis strain SC1401

60.882

88.542

0.539
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.195

85.417

0.531
  recA Acinetobacter baumannii D1279779

61.656

84.896

0.523
  recA Vibrio cholerae strain A1552

61.92

84.115

0.521
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.92

84.115

0.521
  recA Neisseria gonorrhoeae MS11

60.241

86.458

0.521
  recA Neisseria gonorrhoeae MS11

60.241

86.458

0.521
  recA Neisseria gonorrhoeae strain FA1090

60.241

86.458

0.521
  recA Acinetobacter baylyi ADP1

61.043

84.896

0.518
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.663

85.677

0.503
  recA Pseudomonas stutzeri DSM 10701

58.589

84.896

0.497
  recA Helicobacter pylori strain NCTC11637

57.751

85.677

0.495
  recA Helicobacter pylori 26695

57.751

85.677

0.495
  recA Ralstonia pseudosolanacearum GMI1000

59.621

82.552

0.492