Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FJQ98_RS06500 Genome accession   NZ_CP067341
Coordinates   1380523..1381590 (+) Length   355 a.a.
NCBI ID   WP_053594274.1    Uniprot ID   A0A0M8Q1D8
Organism   Lysinibacillus agricola strain FJAT-51161     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1375523..1386590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJQ98_RS06475 (FJQ98_06475) - 1376245..1376502 (+) 258 WP_053594270.1 DUF3243 domain-containing protein -
  FJQ98_RS06480 (FJQ98_06480) - 1376731..1377519 (+) 789 WP_053594560.1 DUF3388 domain-containing protein -
  FJQ98_RS06485 (FJQ98_06485) - 1377545..1378459 (+) 915 WP_201406656.1 helix-turn-helix domain-containing protein -
  FJQ98_RS06490 (FJQ98_06490) pgsA 1378510..1379088 (+) 579 WP_053594272.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FJQ98_RS06495 (FJQ98_06495) cinA 1379106..1380365 (+) 1260 WP_053594273.1 competence/damage-inducible protein A Machinery gene
  FJQ98_RS06500 (FJQ98_06500) recA 1380523..1381590 (+) 1068 WP_053594274.1 recombinase RecA Machinery gene
  FJQ98_RS06505 (FJQ98_06505) rny 1382334..1383893 (+) 1560 WP_053594275.1 ribonuclease Y -
  FJQ98_RS06510 (FJQ98_06510) - 1384253..1384975 (+) 723 WP_053594276.1 Wzz/FepE/Etk N-terminal domain-containing protein -
  FJQ98_RS06515 (FJQ98_06515) - 1385123..1386310 (+) 1188 WP_053594277.1 hypothetical protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38215.40 Da        Isoelectric Point: 4.7884

>NTDB_id=525479 FJQ98_RS06500 WP_053594274.1 1380523..1381590(+) (recA) [Lysinibacillus agricola strain FJAT-51161]
MSDRKAALEQALKQIEKNFGKGSIMKLGEKTDLEIATSSSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQANGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIMGNRT
KIKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGRENAKQYLKENPAVLDDIANK
IRASYGIASSSYTIAAHGEEEEMDDELKLLLEDEK

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=525479 FJQ98_RS06500 WP_053594274.1 1380523..1381590(+) (recA) [Lysinibacillus agricola strain FJAT-51161]
ATGAGTGATCGTAAAGCAGCCTTAGAACAGGCGTTAAAACAAATTGAAAAGAATTTTGGTAAAGGTTCTATCATGAAACT
TGGCGAAAAAACCGATTTAGAAATCGCTACATCTTCAAGTGGTTCGTTAGCACTTGATGCTGCATTAGGTGTTGGTGGTT
ATCCACGTGGACGTATTATTGAAGTATATGGCCCGGAATCATCAGGTAAAACAACGGTTGCTTTACATGCTATTGCAGAA
GTGCAAGCAAATGGCGGACAAGCTGCTTTTATCGATGCTGAGCATGCTTTAGATCCAATCTATGCACAAAAATTGGGCGT
CAATATTGATGAGCTTCTATTATCGCAACCAGATACAGGAGAGCAAGCACTTGAGATTGCAGAAGCATTAGTACGTAGTG
GTGCTATCGATATCATCGTTATTGACTCTGTAGCAGCATTAGTTCCAAAAGCTGAAATTGAAGGGGATATGGGTGATTCA
CATGTCGGTCTACAAGCTCGTTTAATGTCTCAAGCATTACGTAAGCTTTCAGGTGCTATCAATAAATCAAAAACGATTGC
TATTTTCATTAACCAAATACGTGAAAAAATCGGTGTTATGTTCGGAAACCCAGAAACAACACCTGGTGGTCGTGCGCTTA
AATTCTATAGCTCCGTTCGCTTAGAAGTACGTCGTGCAGAAGCTATTAAACAAGGCAATGACATTATGGGTAACCGTACA
AAAATTAAAATTGTGAAAAACAAAGTAGCACCACCATTCCGTACAGCTGAAGTCGATATTATGTACGGTGAAGGAATTTC
AAAAGAGGGCGAAACAGTCGATTTAGGTGTTGAACTAGACATCGTTCAAAAAAGCGGTTCTTGGTATGCTTACGGTGATG
AGCGCCTAGGTCAAGGTCGTGAAAATGCCAAACAGTATTTAAAAGAAAATCCAGCAGTACTTGACGACATTGCGAATAAA
ATCCGTGCTTCTTACGGTATTGCATCTTCTTCATATACTATTGCGGCTCATGGTGAAGAGGAAGAAATGGATGATGAATT
AAAGCTTCTTCTTGAAGACGAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M8Q1D8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.85

92.113

0.8
  recA Latilactobacillus sakei subsp. sakei 23K

76.074

91.831

0.699
  recA Streptococcus mitis SK321

63.712

100

0.648
  recA Streptococcus mitis NCTC 12261

63.712

100

0.648
  recA Streptococcus pyogenes NZ131

64.507

100

0.645
  recA Streptococcus mutans UA159

65.23

98.028

0.639
  recA Streptococcus pneumoniae TIGR4

67.879

92.958

0.631
  recA Streptococcus pneumoniae Rx1

67.879

92.958

0.631
  recA Streptococcus pneumoniae D39

67.879

92.958

0.631
  recA Streptococcus pneumoniae R6

67.879

92.958

0.631
  recA Lactococcus lactis subsp. cremoris KW2

66.467

94.085

0.625
  recA Neisseria gonorrhoeae strain FA1090

63.793

98.028

0.625
  recA Neisseria gonorrhoeae MS11

63.793

98.028

0.625
  recA Neisseria gonorrhoeae MS11

63.793

98.028

0.625
  recA Acinetobacter baylyi ADP1

61.605

98.31

0.606
  recA Helicobacter pylori strain NCTC11637

65.231

91.549

0.597
  recA Helicobacter pylori 26695

64.923

91.549

0.594
  recA Acinetobacter baumannii D1279779

60

98.592

0.592
  recA Ralstonia pseudosolanacearum GMI1000

63.72

92.394

0.589
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.11

91.831

0.589
  recA Glaesserella parasuis strain SC1401

60.526

96.338

0.583
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.19

91.831

0.58
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.75

90.141

0.575
  recA Vibrio cholerae strain A1552

63.75

90.141

0.575
  recA Pseudomonas stutzeri DSM 10701

61.702

92.676

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

90.986

0.569