Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   FJQ98_RS06495 Genome accession   NZ_CP067341
Coordinates   1379106..1380365 (+) Length   419 a.a.
NCBI ID   WP_053594273.1    Uniprot ID   A0A0N0S2C8
Organism   Lysinibacillus agricola strain FJAT-51161     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1374106..1385365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJQ98_RS06465 (FJQ98_06465) - 1374168..1375472 (+) 1305 WP_053594268.1 pitrilysin family protein -
  FJQ98_RS06470 (FJQ98_06470) - 1375469..1376200 (+) 732 WP_201406655.1 SDR family oxidoreductase -
  FJQ98_RS06475 (FJQ98_06475) - 1376245..1376502 (+) 258 WP_053594270.1 DUF3243 domain-containing protein -
  FJQ98_RS06480 (FJQ98_06480) - 1376731..1377519 (+) 789 WP_053594560.1 DUF3388 domain-containing protein -
  FJQ98_RS06485 (FJQ98_06485) - 1377545..1378459 (+) 915 WP_201406656.1 helix-turn-helix domain-containing protein -
  FJQ98_RS06490 (FJQ98_06490) pgsA 1378510..1379088 (+) 579 WP_053594272.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FJQ98_RS06495 (FJQ98_06495) cinA 1379106..1380365 (+) 1260 WP_053594273.1 competence/damage-inducible protein A Machinery gene
  FJQ98_RS06500 (FJQ98_06500) recA 1380523..1381590 (+) 1068 WP_053594274.1 recombinase RecA Machinery gene
  FJQ98_RS06505 (FJQ98_06505) rny 1382334..1383893 (+) 1560 WP_053594275.1 ribonuclease Y -
  FJQ98_RS06510 (FJQ98_06510) - 1384253..1384975 (+) 723 WP_053594276.1 Wzz/FepE/Etk N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45251.84 Da        Isoelectric Point: 4.8488

>NTDB_id=525478 FJQ98_RS06495 WP_053594273.1 1379106..1380365(+) (cinA) [Lysinibacillus agricola strain FJAT-51161]
MNAEILAVGSELLLGQITNTNARFISSQLSELGINVFYHTVVGDNAKRLEEAISVAETRADLIIFSGGLGPTKDDLTKET
IARHLGVPLEFDDIALTYIEQFFAKRGRPMTDNNRKQALVLAGSEVLANHHGMAPGMILTKDRRTYILLPGPPKELEPMF
QFEAKPKLGVMLNAGGVIASHVMRFYGIGEAELEVRIQDILDAQTNPTIAPLASDGEVTLRVTAKAETEQEAQQLIATKV
AEIQALVGDFQYGIDDDSLASKTVEMLLDNKLTISAAESLTAGLFQSELAEIPGVGDALVGGVVTYTEEAKIKQLGITKE
LLDTHGIVSSECAAAMASAVREKIGTTIGIGLTGAAGPTAHDHQPVGTVWIGIAIGDEEPITYLLHLSGMRNTNRLRAVK
FTCHYLMQLLEERGFTKRY

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=525478 FJQ98_RS06495 WP_053594273.1 1379106..1380365(+) (cinA) [Lysinibacillus agricola strain FJAT-51161]
ATGAATGCTGAAATTCTTGCAGTTGGCTCAGAGTTATTGCTTGGTCAGATTACGAATACAAATGCGAGATTTATTTCGAG
TCAGTTGTCGGAGTTAGGGATAAATGTGTTTTATCACACTGTTGTTGGAGATAATGCAAAACGTTTAGAAGAGGCTATTT
CCGTTGCAGAGACTCGTGCTGATTTAATCATTTTCTCTGGTGGGCTTGGTCCTACAAAGGATGATTTAACAAAGGAAACG
ATTGCTCGTCATCTTGGTGTTCCTCTCGAATTTGATGATATCGCACTGACATATATTGAGCAATTTTTTGCAAAACGAGG
ACGTCCAATGACGGACAATAATCGTAAGCAAGCTTTAGTATTAGCAGGTAGTGAAGTATTAGCAAACCATCACGGTATGG
CACCTGGCATGATATTAACAAAAGATAGGCGTACGTATATTTTGCTGCCAGGGCCACCCAAAGAGCTTGAGCCAATGTTC
CAATTTGAAGCAAAACCAAAGCTTGGTGTGATGTTGAATGCCGGAGGGGTTATTGCATCACATGTTATGCGCTTTTACGG
TATCGGAGAAGCGGAACTTGAGGTACGGATCCAAGATATTTTAGATGCTCAAACAAATCCAACTATTGCTCCTCTTGCTT
CGGACGGCGAGGTTACATTGCGTGTAACTGCCAAGGCAGAAACCGAGCAAGAAGCGCAGCAGCTTATTGCCACAAAGGTA
GCAGAGATTCAAGCGCTTGTTGGTGACTTTCAATATGGTATAGATGATGATTCTCTTGCCTCTAAAACTGTAGAAATGTT
ACTAGATAATAAGTTAACAATTTCTGCGGCAGAAAGTTTAACAGCAGGGTTATTTCAGTCAGAGCTTGCTGAGATACCGG
GTGTAGGAGATGCCCTTGTTGGTGGCGTTGTTACGTATACAGAAGAGGCTAAGATTAAGCAGCTCGGTATTACTAAAGAA
TTATTAGATACACATGGTATTGTAAGCAGTGAGTGTGCAGCCGCTATGGCTAGTGCTGTGCGTGAAAAAATCGGTACTAC
TATTGGTATTGGATTAACAGGTGCAGCAGGTCCTACAGCACACGATCATCAGCCAGTAGGGACGGTTTGGATTGGTATTG
CTATTGGCGATGAAGAACCAATTACGTATTTGCTTCATTTATCGGGCATGCGCAATACGAATCGACTTCGCGCGGTGAAG
TTTACATGTCATTATTTAATGCAACTTTTGGAAGAACGAGGCTTTACAAAACGCTATTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0N0S2C8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

53.883

98.329

0.53
  cinA Streptococcus mitis SK321

45.953

91.408

0.42
  cinA Streptococcus pneumoniae Rx1

45.692

91.408

0.418
  cinA Streptococcus pneumoniae TIGR4

45.692

91.408

0.418
  cinA Streptococcus pneumoniae R6

45.692

91.408

0.418
  cinA Streptococcus mitis NCTC 12261

45.431

91.408

0.415
  cinA Streptococcus pneumoniae D39

45.431

91.408

0.415
  cinA Streptococcus mutans UA159

45.119

90.453

0.408