Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JHW45_RS05530 Genome accession   NZ_CP067134
Coordinates   1120227..1121297 (+) Length   356 a.a.
NCBI ID   WP_272859936.1    Uniprot ID   -
Organism   Paracoccus stylophorae strain LMG25392     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1115363..1121297 1120227..1121297 within 0


Gene organization within MGE regions


Location: 1115363..1121297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHW45_RS05505 (JHW45_05460) - 1115363..1117387 (-) 2025 WP_272859932.1 DEAD/DEAH box helicase -
  JHW45_RS05510 (JHW45_05465) ssb 1117577..1118068 (-) 492 WP_272859933.1 single-stranded DNA-binding protein Machinery gene
  JHW45_RS05515 (JHW45_05470) - 1118349..1118972 (+) 624 WP_419181835.1 lytic transglycosylase domain-containing protein -
  JHW45_RS05520 (JHW45_05475) - 1118979..1119314 (-) 336 WP_272859934.1 DUF6665 family protein -
  JHW45_RS05525 (JHW45_05480) - 1119397..1119981 (-) 585 WP_272859935.1 sulfotransferase family 2 domain-containing protein -
  JHW45_RS05530 (JHW45_05485) recA 1120227..1121297 (+) 1071 WP_272859936.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38409.70 Da        Isoelectric Point: 5.3426

>NTDB_id=525138 JHW45_RS05530 WP_272859936.1 1120227..1121297(+) (recA) [Paracoccus stylophorae strain LMG25392]
MAQASIFDMKDKRSADRQKALDSALAQIERQFGKGSIMKLGKDNPVTEIESTSTGSLGLDIALGIGGLPKGRIIEIYGPE
SSGKTTLTLHAVAEEQKKGGVCAFVDAEHALDPQYARKLGVNLDELLISQPDTGEQALEIVDTLVRSGAVSMVVIDSVAA
LTPKAEIEGDMGDHQVGAQARLMSQAMRKLTASIGRSNCMVIFINQIRMKIGVMFGSPETTSGGNALKFYASVRLDIRRT
GSIKDRDEVVGNSTRVKVVKNKVAPPFRQVEFDIMYGEGISKMGELVDLGVKAGVVEKSGAWYSYGDERIGQGRENAKQY
LREHPDLAYAIEDKIRASHGLDFGVSGGEEEALTEE

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=525138 JHW45_RS05530 WP_272859936.1 1120227..1121297(+) (recA) [Paracoccus stylophorae strain LMG25392]
ATGGCACAGGCGAGCATTTTCGACATGAAGGACAAACGCAGCGCGGACAGGCAGAAGGCGCTGGACAGTGCGCTGGCGCA
GATCGAGCGTCAATTCGGCAAGGGCTCGATCATGAAGCTGGGCAAGGACAACCCGGTGACCGAGATCGAGTCGACCTCGA
CCGGCTCGCTGGGGCTGGACATCGCGCTGGGCATCGGCGGATTGCCCAAGGGCCGGATCATCGAGATCTATGGTCCCGAA
AGCAGCGGCAAGACGACGCTGACGCTGCACGCCGTGGCCGAGGAACAGAAGAAGGGCGGTGTCTGCGCCTTCGTCGACGC
CGAACACGCGTTGGACCCGCAATATGCGCGCAAGCTGGGCGTCAATCTGGATGAATTGCTGATCAGCCAGCCCGATACCG
GCGAACAGGCGCTGGAAATCGTCGATACGCTGGTGCGGTCGGGGGCGGTCAGCATGGTCGTCATCGATTCGGTCGCCGCG
CTGACGCCCAAGGCCGAGATCGAGGGCGACATGGGCGATCACCAGGTCGGCGCCCAGGCCCGGCTGATGAGCCAGGCGAT
GCGCAAGCTGACCGCCAGCATCGGCCGGTCGAACTGCATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGCAGCCCCGAAACCACCAGCGGCGGCAACGCGCTGAAATTCTATGCCTCGGTGCGTCTGGACATCCGCCGCACC
GGCTCGATCAAGGATCGCGACGAGGTGGTCGGCAACTCGACCCGCGTCAAGGTGGTCAAGAACAAGGTCGCGCCTCCGTT
CCGGCAGGTCGAGTTCGACATCATGTATGGCGAAGGCATCAGCAAGATGGGCGAGTTGGTCGATTTGGGCGTGAAGGCCG
GCGTGGTCGAAAAGTCCGGCGCCTGGTATTCCTATGGCGACGAGCGGATCGGACAGGGGCGCGAAAACGCCAAGCAGTAT
CTGCGCGAACATCCGGACCTGGCCTATGCGATCGAGGACAAGATCCGCGCCAGCCACGGCCTGGATTTCGGCGTCTCCGG
CGGCGAGGAAGAGGCGCTGACCGAGGAGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

73.476

92.135

0.677
  recA Neisseria gonorrhoeae MS11

68.935

94.944

0.654
  recA Neisseria gonorrhoeae strain FA1090

68.935

94.944

0.654
  recA Neisseria gonorrhoeae MS11

68.935

94.944

0.654
  recA Pseudomonas stutzeri DSM 10701

71.118

90.449

0.643
  recA Glaesserella parasuis strain SC1401

70.807

90.449

0.64
  recA Vibrio cholerae strain A1552

69.782

90.169

0.629
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.782

90.169

0.629
  recA Bacillus subtilis subsp. subtilis str. 168

67.988

92.135

0.626
  recA Acinetobacter baumannii D1279779

69.47

90.169

0.626
  recA Acinetobacter baylyi ADP1

69.47

90.169

0.626
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.282

94.663

0.618
  recA Helicobacter pylori 26695

66.564

91.573

0.61
  recA Helicobacter pylori strain NCTC11637

65.951

91.573

0.604
  recA Streptococcus mitis SK321

60.745

98.034

0.596
  recA Streptococcus mitis NCTC 12261

60.807

97.472

0.593
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.724

91.573

0.593
  recA Streptococcus pneumoniae TIGR4

62.426

94.944

0.593
  recA Streptococcus pneumoniae R6

62.426

94.944

0.593
  recA Streptococcus pneumoniae Rx1

62.426

94.944

0.593
  recA Streptococcus pneumoniae D39

62.426

94.944

0.593
  recA Lactococcus lactis subsp. cremoris KW2

61.538

94.944

0.584
  recA Streptococcus pyogenes NZ131

62.31

92.416

0.576
  recA Latilactobacillus sakei subsp. sakei 23K

62.577

91.573

0.573
  recA Streptococcus mutans UA159

60.606

92.697

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.185

91.011

0.548