Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JHW45_RS05510 Genome accession   NZ_CP067134
Coordinates   1117577..1118068 (-) Length   163 a.a.
NCBI ID   WP_272859933.1    Uniprot ID   -
Organism   Paracoccus stylophorae strain LMG25392     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1115363..1121297 1117577..1118068 within 0


Gene organization within MGE regions


Location: 1115363..1121297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHW45_RS05505 (JHW45_05460) - 1115363..1117387 (-) 2025 WP_272859932.1 DEAD/DEAH box helicase -
  JHW45_RS05510 (JHW45_05465) ssb 1117577..1118068 (-) 492 WP_272859933.1 single-stranded DNA-binding protein Machinery gene
  JHW45_RS05515 (JHW45_05470) - 1118349..1118972 (+) 624 WP_419181835.1 lytic transglycosylase domain-containing protein -
  JHW45_RS05520 (JHW45_05475) - 1118979..1119314 (-) 336 WP_272859934.1 DUF6665 family protein -
  JHW45_RS05525 (JHW45_05480) - 1119397..1119981 (-) 585 WP_272859935.1 sulfotransferase family 2 domain-containing protein -
  JHW45_RS05530 (JHW45_05485) recA 1120227..1121297 (+) 1071 WP_272859936.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17535.18 Da        Isoelectric Point: 5.3476

>NTDB_id=525137 JHW45_RS05510 WP_272859933.1 1117577..1118068(-) (ssb) [Paracoccus stylophorae strain LMG25392]
MAGSVNKVILIGNLGRDPEIRTFQNGGKVANLRIATSDQWKDRNTGERREKTEWHSVAIMSEGLVNVVERYLKKGSKVYV
EGQLETRKWQDQSGQDRYTTEVVLRGFNGTLQMLDGRGDGGGGRDSGGFGGGGYEDRGGGGSAPEGGTSSGGGRSDYDDE
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=525137 JHW45_RS05510 WP_272859933.1 1117577..1118068(-) (ssb) [Paracoccus stylophorae strain LMG25392]
ATGGCAGGCAGCGTCAACAAGGTCATTCTGATCGGCAATCTGGGTCGCGACCCCGAGATCCGCACCTTCCAGAACGGCGG
CAAGGTGGCCAATCTGCGGATCGCGACCTCGGACCAGTGGAAGGATCGCAACACCGGCGAGCGTCGCGAAAAGACCGAGT
GGCATTCGGTGGCGATCATGTCCGAAGGGCTGGTGAACGTGGTCGAGCGGTATCTGAAAAAGGGCAGCAAGGTCTATGTC
GAAGGCCAGCTGGAAACCCGCAAATGGCAGGACCAGTCGGGCCAGGACCGCTATACGACCGAGGTGGTGCTGCGCGGCTT
CAACGGCACGTTGCAGATGCTGGACGGCCGCGGCGACGGCGGCGGCGGCCGCGATTCGGGCGGCTTCGGCGGCGGCGGTT
ACGAAGACAGAGGCGGCGGCGGTTCGGCGCCGGAAGGCGGGACGTCATCCGGGGGCGGGCGCAGCGATTACGACGACGAA
ATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.312

100

0.54
  ssb Vibrio cholerae strain A1552

50.867

100

0.54
  ssb Neisseria gonorrhoeae MS11

36.872

100

0.405
  ssb Neisseria meningitidis MC58

36.313

100

0.399