Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IGS65_RS07205 Genome accession   NZ_CP066294
Coordinates   1455096..1456247 (-) Length   383 a.a.
NCBI ID   WP_002288707.1    Uniprot ID   -
Organism   Streptococcus mutans strain 27-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1450096..1461247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGS65_RS07165 (IGS65_007165) - 1451479..1451778 (-) 300 WP_002262384.1 DUF1292 domain-containing protein -
  IGS65_RS07170 (IGS65_007170) ruvX 1451859..1452278 (-) 420 WP_002284631.1 Holliday junction resolvase RuvX -
  IGS65_RS07175 (IGS65_007175) - 1452275..1452544 (-) 270 WP_002262386.1 IreB family regulatory phosphoprotein -
  IGS65_RS07180 (IGS65_007180) brsR 1452712..1453146 (+) 435 WP_002284632.1 bacteriocin genes transcriptional regulator BrsR Regulator
  IGS65_RS07185 (IGS65_007185) brsM 1453159..1453605 (+) 447 WP_002266978.1 bacteriocin genes regulator BrsM Regulator
  IGS65_RS07190 (IGS65_007190) - 1453596..1453807 (-) 212 Protein_1408 hypothetical protein -
  IGS65_RS07195 (IGS65_007195) - 1453936..1454361 (-) 426 WP_002266116.1 hypothetical protein -
  IGS65_RS07200 (IGS65_007200) spx 1454613..1455011 (-) 399 WP_002262391.1 transcriptional regulator Spx -
  IGS65_RS07205 (IGS65_007205) recA 1455096..1456247 (-) 1152 WP_002288707.1 recombinase RecA Machinery gene
  IGS65_RS07210 (IGS65_007210) cinA 1456287..1457543 (-) 1257 WP_002266115.1 competence/damage-inducible protein A Machinery gene
  IGS65_RS07215 (IGS65_007215) - 1457692..1458252 (-) 561 WP_002268198.1 DNA-3-methyladenine glycosylase I -
  IGS65_RS07220 (IGS65_007220) ruvA 1458334..1458927 (-) 594 WP_002262395.1 Holliday junction branch migration protein RuvA -
  IGS65_RS07225 (IGS65_007225) mutL 1459110..1461065 (-) 1956 WP_192072428.1 DNA mismatch repair endonuclease MutL -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41433.09 Da        Isoelectric Point: 5.1601

>NTDB_id=519145 IGS65_RS07205 WP_002288707.1 1455096..1456247(-) (recA) [Streptococcus mutans strain 27-3]
MAKRIKKTEEITKKFGDERKKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIVEIYGP
ESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRG
NTQIKGTGEQKDSNIGKETKIKVVKNKVAPPFKEAFVEIIYGEGISRTGELVKIASDLGIIQKAGAWYSYNGEKIGQGSE
NAKKFLADNPEIFDDIDHKVRVQYGLIEEDNTKEKQTSKEKETDEKADKNLVLELDDTIELED

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=519145 IGS65_RS07205 WP_002288707.1 1455096..1456247(-) (recA) [Streptococcus mutans strain 27-3]
TTGGCCAAAAGAATAAAAAAGACAGAAGAAATAACGAAAAAATTTGGTGATGAGCGTAAGAAAGCTCTTGATGATGCTTT
GAAAAACATCGAAAAAGATTTTGGTAAAGGTGCAGTTATGCGTCTGGGTGAACGCGCTGAACAAAAGGTTCAGGTGATGA
GTTCAGGAAGTCTGGCTCTTGATATTGCTCTTGGGGCAGGCGGTTATCCAAAAGGGCGTATCGTTGAGATTTACGGGCCA
GAATCTTCTGGTAAGACAACTGTCGCTCTTCATGCTGTTGCTCAGGCGCAAAAAGATGGCGGTATTGCCGCTTTCATTGA
TGCAGAACATGCCCTTGATCCAGCCTATGCTGCTGCTCTTGGCGTTAATATTGATGAGCTTTTGCTTTCACAACCAGATT
CAGGAGAACAGGGTCTTGAAATTGCAGGGAAATTGATTGATTCTGGCGCTGTTGATTTAGTTGTTGTTGACTCAGTGGCA
GCTTTAGTACCACGTGCGGAGATTGACGGAGATATTGGTGATAGTCATGTTGGCTTACAAGCACGCATGATGAGTCAAGC
GATGCGTAAATTATCAGCTTCAATCAATAAAACAAAAACCATTGCCATTTTTATTAATCAATTGCGGGAAAAAGTTGGTA
TTATGTTTGGTAATCCAGAAACAACCCCTGGCGGGCGTGCCTTGAAGTTTTATTCTTCTGTGCGTCTTGATGTCCGTGGC
AATACTCAAATTAAAGGAACCGGGGAACAAAAAGACAGCAATATTGGTAAAGAGACCAAAATTAAAGTTGTTAAAAATAA
AGTTGCTCCACCATTTAAGGAAGCTTTTGTAGAAATTATATATGGTGAAGGCATTTCTCGTACAGGTGAATTAGTTAAGA
TTGCCAGTGATTTGGGAATTATCCAAAAAGCTGGAGCTTGGTACTCTTATAATGGTGAAAAAATTGGGCAAGGTTCTGAA
AATGCTAAAAAATTCCTAGCTGATAATCCAGAAATTTTTGATGACATCGATCATAAAGTGCGTGTTCAATATGGTTTAAT
TGAGGAAGATAATACTAAAGAAAAACAGACTTCTAAAGAAAAAGAAACTGATGAGAAAGCTGACAAAAACCTTGTTTTAG
AGCTGGATGATACAATTGAGCTTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

99.478

100

0.995
  recA Streptococcus pyogenes NZ131

86.945

100

0.869
  recA Streptococcus mitis NCTC 12261

84.293

99.739

0.841
  recA Streptococcus mitis SK321

83.77

99.739

0.836
  recA Streptococcus pneumoniae R6

82.857

100

0.833
  recA Streptococcus pneumoniae Rx1

82.857

100

0.833
  recA Streptococcus pneumoniae D39

82.857

100

0.833
  recA Streptococcus pneumoniae TIGR4

82.857

100

0.833
  recA Lactococcus lactis subsp. cremoris KW2

76.657

90.601

0.695
  recA Latilactobacillus sakei subsp. sakei 23K

70

86.162

0.603
  recA Bacillus subtilis subsp. subtilis str. 168

68.389

85.901

0.587
  recA Acinetobacter baylyi ADP1

59.659

91.906

0.548
  recA Neisseria gonorrhoeae MS11

62.538

86.423

0.54
  recA Neisseria gonorrhoeae MS11

62.538

86.423

0.54
  recA Neisseria gonorrhoeae strain FA1090

62.538

86.423

0.54
  recA Acinetobacter baumannii D1279779

59.312

91.123

0.54
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.411

89.034

0.538
  recA Glaesserella parasuis strain SC1401

60.294

88.773

0.535
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.92

84.334

0.522
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.231

84.856

0.52
  recA Vibrio cholerae strain A1552

61.231

84.856

0.52
  recA Pseudomonas stutzeri DSM 10701

58.16

87.99

0.512
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.704

86.423

0.499
  recA Ralstonia pseudosolanacearum GMI1000

59.621

82.768

0.493
  recA Helicobacter pylori strain NCTC11637

56.287

87.206

0.491
  recA Helicobacter pylori 26695

56.287

87.206

0.491