Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I5435_RS05225 Genome accession   NZ_CP066226
Coordinates   1139178..1140242 (+) Length   354 a.a.
NCBI ID   WP_024361961.1    Uniprot ID   A0A2S0K3L9
Organism   Lysinibacillus sp. C5.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1134178..1145242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5435_RS05200 - 1134830..1135087 (+) 258 WP_024361966.1 DUF3243 domain-containing protein -
  I5435_RS05205 - 1135315..1136103 (+) 789 WP_337983337.1 DUF3388 domain-containing protein -
  I5435_RS05210 - 1136120..1137031 (+) 912 WP_174412969.1 RodZ domain-containing protein -
  I5435_RS05215 pgsA 1137079..1137657 (+) 579 WP_024361963.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I5435_RS05220 cinA 1137675..1138934 (+) 1260 WP_108029532.1 competence/damage-inducible protein A Machinery gene
  I5435_RS05225 recA 1139178..1140242 (+) 1065 WP_024361961.1 recombinase RecA Machinery gene
  I5435_RS05230 rny 1140697..1142256 (+) 1560 WP_024361960.1 ribonuclease Y -
  I5435_RS05235 - 1142582..1143280 (+) 699 WP_337983338.1 Wzz/FepE/Etk N-terminal domain-containing protein -
  I5435_RS05240 - 1143312..1144016 (+) 705 WP_337983339.1 CpsD/CapB family tyrosine-protein kinase -
  I5435_RS05245 - 1144048..1144812 (+) 765 WP_025218824.1 CpsB/CapC family capsule biosynthesis tyrosine phosphatase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38189.46 Da        Isoelectric Point: 4.7884

>NTDB_id=518597 I5435_RS05225 WP_024361961.1 1139178..1140242(+) (recA) [Lysinibacillus sp. C5.1]
MSDRKAALEQALKQIEKNFGKGSIMKLGEKTDLEIATSSSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQAKGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIMGNRT
KIKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGRENAKQYLKENPAILEEIANK
IRSSYGIAASSYTIAAHDDEEMDEELMLLLEDDK

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=518597 I5435_RS05225 WP_024361961.1 1139178..1140242(+) (recA) [Lysinibacillus sp. C5.1]
ATGAGTGATCGTAAAGCAGCCTTAGAACAGGCGTTAAAACAAATTGAAAAGAATTTCGGTAAAGGCTCTATCATGAAGCT
AGGCGAAAAAACAGATTTAGAAATTGCTACATCTTCAAGTGGTTCGCTAGCGCTTGATGCAGCATTAGGTGTTGGTGGCT
ATCCACGTGGACGTATTATTGAAGTATATGGTCCAGAATCATCAGGTAAAACGACCGTTGCGCTTCATGCGATTGCGGAA
GTACAAGCTAAGGGCGGACAAGCAGCATTTATCGATGCTGAACATGCATTAGATCCAATTTACGCTCAAAAATTAGGCGT
AAATATTGATGAACTATTACTATCTCAACCAGATACAGGTGAGCAAGCGCTTGAAATTGCAGAAGCATTAGTGCGTAGTG
GGGCGATTGATATTATCGTTATTGACTCTGTTGCAGCACTTGTACCAAAAGCTGAAATCGAAGGCGATATGGGTGATTCG
CACGTTGGTTTACAAGCTCGTTTAATGTCTCAAGCATTACGTAAGCTTTCAGGTGCGATTAATAAGTCTAAAACAATCGC
TATTTTCATTAACCAAATTCGTGAAAAAATTGGTGTTATGTTCGGAAATCCAGAAACAACTCCTGGTGGTCGTGCGCTAA
AATTCTATAGCTCAGTTCGTTTAGAAGTACGTCGTGCTGAAGCAATCAAACAAGGTAATGACATTATGGGTAACCGTACG
AAAATTAAAATTGTCAAAAATAAAGTAGCGCCACCATTCCGTACAGCTGAAGTTGATATTATGTATGGTGAAGGGATTTC
TAAAGAAGGCGAAACGGTGGATTTAGGTGTAGAATTAGACATCGTTCAAAAAAGTGGATCTTGGTATGCATATGGTGATG
AGCGTCTAGGCCAAGGACGTGAAAACGCAAAACAATATTTAAAAGAAAACCCTGCTATTTTAGAAGAAATTGCAAATAAA
ATTCGTTCTTCTTATGGCATAGCTGCATCATCTTATACCATTGCTGCACATGATGATGAGGAAATGGATGAAGAGTTAAT
GCTTCTTCTTGAAGATGACAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S0K3L9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.156

92.373

0.805
  recA Latilactobacillus sakei subsp. sakei 23K

71.51

99.153

0.709
  recA Streptococcus mitis NCTC 12261

65.193

100

0.667
  recA Streptococcus mitis SK321

63.989

100

0.653
  recA Streptococcus mutans UA159

63.889

100

0.65
  recA Streptococcus pneumoniae Rx1

68.485

93.22

0.638
  recA Streptococcus pneumoniae D39

68.485

93.22

0.638
  recA Streptococcus pneumoniae R6

68.485

93.22

0.638
  recA Streptococcus pneumoniae TIGR4

68.485

93.22

0.638
  recA Streptococcus pyogenes NZ131

67.683

92.655

0.627
  recA Lactococcus lactis subsp. cremoris KW2

66.364

93.22

0.619
  recA Neisseria gonorrhoeae strain FA1090

65.957

92.938

0.613
  recA Neisseria gonorrhoeae MS11

65.957

92.938

0.613
  recA Neisseria gonorrhoeae MS11

65.957

92.938

0.613
  recA Helicobacter pylori strain NCTC11637

62.974

96.893

0.61
  recA Acinetobacter baylyi ADP1

62.069

98.305

0.61
  recA Helicobacter pylori 26695

62.682

96.893

0.607
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.391

96.893

0.605
  recA Acinetobacter baumannii D1279779

60.745

98.588

0.599
  recA Glaesserella parasuis strain SC1401

60.458

98.588

0.596
  recA Ralstonia pseudosolanacearum GMI1000

63.914

92.373

0.59
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.804

92.09

0.588
  recA Vibrio cholerae strain A1552

64.062

90.395

0.579
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.062

90.395

0.579
  recA Pseudomonas stutzeri DSM 10701

63.24

90.678

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

91.243

0.571