Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   I5435_RS05220 Genome accession   NZ_CP066226
Coordinates   1137675..1138934 (+) Length   419 a.a.
NCBI ID   WP_108029532.1    Uniprot ID   -
Organism   Lysinibacillus sp. C5.1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1132675..1143934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5435_RS05190 - 1132755..1134053 (+) 1299 WP_337983336.1 pitrilysin family protein -
  I5435_RS05195 - 1134053..1134781 (+) 729 WP_025218820.1 SDR family oxidoreductase -
  I5435_RS05200 - 1134830..1135087 (+) 258 WP_024361966.1 DUF3243 domain-containing protein -
  I5435_RS05205 - 1135315..1136103 (+) 789 WP_337983337.1 DUF3388 domain-containing protein -
  I5435_RS05210 - 1136120..1137031 (+) 912 WP_174412969.1 RodZ domain-containing protein -
  I5435_RS05215 pgsA 1137079..1137657 (+) 579 WP_024361963.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I5435_RS05220 cinA 1137675..1138934 (+) 1260 WP_108029532.1 competence/damage-inducible protein A Machinery gene
  I5435_RS05225 recA 1139178..1140242 (+) 1065 WP_024361961.1 recombinase RecA Machinery gene
  I5435_RS05230 rny 1140697..1142256 (+) 1560 WP_024361960.1 ribonuclease Y -
  I5435_RS05235 - 1142582..1143280 (+) 699 WP_337983338.1 Wzz/FepE/Etk N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45260.70 Da        Isoelectric Point: 5.0431

>NTDB_id=518596 I5435_RS05220 WP_108029532.1 1137675..1138934(+) (cinA) [Lysinibacillus sp. C5.1]
MNAEILAVGSELLLGQITNTNAKFISNQLSELGINVFYHTVVGDNSKRLEEAISIAESRANLIIFSGGLGPTKDDLTKET
IARHLGVDLVFDQVALTYIEEFFAKRGRSMTDNNRKQALILAGSEVLANHHGMAPGMILTKDNCTYILLPGPPKELEPMF
QFEAKPKLGKMLNDGGVIVSHVMRFYGIGEAELEVYVQDILDTQTNPTVAPLAADGEVTLRVTAKAQSEDDAHQLIAAKV
AEIRAIVGDYQYGINDDSLASKTVEMLQDNNLTIAAAESLTAGLFQSELAEIPGVGNVLIGGLVTYTEDAKVKQLGISQQ
LLDTHGIVSSECAAAMASAVRQKFGTSIGIGLTGAAGPTAHDHQPVGTVWIGIAIDDEEPITYLLHLSGMRNTNRLRAVK
FTCHYLMQQLEARGYKKRI

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=518596 I5435_RS05220 WP_108029532.1 1137675..1138934(+) (cinA) [Lysinibacillus sp. C5.1]
ATGAATGCTGAAATCCTTGCAGTTGGCTCAGAGTTATTACTTGGACAGATTACAAATACAAATGCAAAATTTATTTCAAA
TCAGCTATCTGAGTTAGGAATTAATGTGTTTTATCATACCGTTGTTGGTGACAATTCAAAACGGTTAGAAGAAGCAATTA
GCATTGCGGAATCGCGCGCTAATCTCATTATTTTTTCAGGAGGCTTAGGTCCAACAAAGGATGATTTGACGAAGGAGACG
ATTGCTCGCCATCTTGGAGTAGACCTTGTATTCGATCAAGTTGCATTGACATATATTGAGGAGTTTTTTGCTAAACGAGG
CCGTTCAATGACGGACAATAATCGCAAGCAGGCGCTAATATTAGCAGGTAGTGAGGTGCTTGCTAATCATCATGGTATGG
CACCAGGAATGATTTTAACAAAAGATAATTGCACTTATATTTTACTTCCTGGCCCTCCAAAGGAATTAGAGCCGATGTTC
CAATTTGAAGCGAAGCCAAAGCTTGGTAAAATGCTTAATGATGGCGGAGTAATTGTGTCTCACGTAATGCGTTTTTATGG
TATTGGGGAAGCAGAGTTAGAAGTATATGTACAGGATATTTTAGATACACAAACCAATCCAACGGTTGCCCCGCTAGCAG
CTGATGGAGAGGTCACTTTACGCGTAACAGCGAAGGCCCAATCAGAGGACGACGCGCACCAGTTGATTGCTGCAAAAGTG
GCAGAAATTCGTGCTATTGTTGGCGACTATCAATATGGCATAAATGATGACTCACTCGCCTCAAAAACGGTGGAAATGTT
GCAGGACAATAATTTAACGATTGCTGCGGCAGAAAGTTTAACAGCTGGTTTATTTCAATCAGAGCTGGCTGAAATACCAG
GTGTAGGCAATGTGCTCATTGGAGGACTGGTGACCTATACCGAAGATGCGAAAGTAAAGCAGCTTGGCATTTCTCAACAA
TTACTAGATACGCATGGTATTGTGAGCAGTGAATGTGCTGCGGCAATGGCTAGTGCAGTACGTCAAAAATTTGGTACAAG
TATCGGTATCGGACTAACAGGTGCGGCTGGTCCTACAGCACATGACCATCAGCCGGTAGGAACGGTATGGATTGGTATTG
CCATAGATGACGAAGAGCCAATTACGTATTTACTTCACTTATCGGGTATGCGCAATACAAACCGATTGCGTGCCGTGAAG
TTTACTTGTCACTATTTAATGCAGCAATTGGAAGCACGAGGTTACAAGAAACGTATTTAG

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(257-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.699

98.329

0.508
  cinA Streptococcus pneumoniae Rx1

45.974

91.885

0.422
  cinA Streptococcus pneumoniae TIGR4

45.974

91.885

0.422
  cinA Streptococcus pneumoniae R6

45.974

91.885

0.422
  cinA Streptococcus mitis SK321

45.953

91.408

0.42
  cinA Streptococcus pneumoniae D39

45.714

91.885

0.42
  cinA Streptococcus mitis NCTC 12261

45.17

91.408

0.413
  cinA Streptococcus mutans UA159

45.503

90.215

0.411
  cinA Streptococcus suis isolate S10

40.212

90.215

0.363