Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JC777_RS13520 Genome accession   NZ_CP066184
Coordinates   2465829..2466860 (+) Length   343 a.a.
NCBI ID   WP_012094871.1    Uniprot ID   A7GRA9
Organism   Bacillus cytotoxicus strain SM1.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2460829..2471860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC777_RS13500 (JC777_13505) - 2462052..2462837 (+) 786 WP_012094875.1 DUF3388 domain-containing protein -
  JC777_RS13505 (JC777_13510) - 2462859..2463785 (+) 927 WP_012094874.1 RodZ domain-containing protein -
  JC777_RS13510 (JC777_13515) pgsA 2463849..2464427 (+) 579 WP_012094873.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JC777_RS13515 (JC777_13520) cinA 2464448..2465686 (+) 1239 WP_048723313.1 competence/damage-inducible protein A Machinery gene
  JC777_RS13520 (JC777_13525) recA 2465829..2466860 (+) 1032 WP_012094871.1 recombinase RecA Machinery gene
  JC777_RS13525 (JC777_13530) rny 2467365..2468927 (+) 1563 WP_012094870.1 ribonuclease Y -
  JC777_RS13530 (JC777_13535) - 2469142..2469936 (+) 795 WP_012094869.1 TIGR00282 family metallophosphoesterase -
  JC777_RS13535 (JC777_13540) spoVS 2470084..2470344 (+) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  JC777_RS13540 (JC777_13545) - 2470409..2471332 (+) 924 WP_012094862.1 dipeptidase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37392.55 Da        Isoelectric Point: 4.9940

>NTDB_id=518209 JC777_RS13520 WP_012094871.1 2465829..2466860(+) (recA) [Bacillus cytotoxicus strain SM1.1]
MSDRQAALDMALKQIEKQFGKGSIMKMGEQAERKVSTVPSGSLSLDVALGVGGYPRGRIIEIYGPESSGKTTVSLHAIAE
VQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQLKQGNEIVGNKT
KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYAYNEERLGQGRENAKQFLKENPDIRDEIAFF
IREHHGIGEDSAPENMEESTTLD

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=518209 JC777_RS13520 WP_012094871.1 2465829..2466860(+) (recA) [Bacillus cytotoxicus strain SM1.1]
ATGAGTGATCGTCAAGCAGCTTTAGATATGGCGTTAAAACAAATAGAGAAGCAATTCGGTAAAGGTTCCATTATGAAAAT
GGGAGAGCAAGCTGAACGCAAAGTTTCAACAGTACCGAGCGGTTCGTTATCACTTGATGTAGCATTGGGAGTTGGTGGTT
ATCCACGCGGTCGTATTATTGAAATTTACGGACCTGAAAGCTCAGGGAAAACGACAGTTTCCTTACATGCGATTGCAGAA
GTGCAACGTCAAGGTGGACAAGCAGCATTTATTGATGCGGAGCATGCGATGGATCCTGTATATGCACAGAAATTAGGTGT
TAACATCGACGAATTACTATTATCACAGCCTGATACAGGGGAACAAGGGTTAGAAATTGCAGAAGCATTAGTACGAAGTG
GTGCAATTGATATTATCGTAATCGACTCTGTAGCTGCCCTTGTACCAAAAGCGGAAATTGAAGGAGAAATGGGTGACTCT
CACGTCGGTTTACAAGCACGTTTAATGTCACAAGCACTTCGTAAACTTTCAGGTGCAATTAATAAATCAAAAACAATTGC
AATCTTTATTAACCAAATTCGTGAAAAAGTTGGAGTTATGTTCGGGAACCCAGAGACAACTCCAGGTGGTCGTGCATTGA
AATTCTATTCAACAATACGTCTTGAAGTACGCCGTGCCGAACAATTAAAGCAAGGTAATGAAATCGTTGGTAATAAAACG
AAAGTAAAAGTAGTGAAAAATAAAGTAGCACCGCCATTCCGCGTGGCAGAAGTGGATATTATGTACGGAGAAGGTATTTC
AAGAGAAGGCGAAATTTTAGATATGGCTTCTGAATTGGATATCGTTCAGAAAAGCGGTGCTTGGTATGCCTATAATGAAG
AGCGTTTAGGACAAGGACGCGAAAATGCAAAACAATTCTTAAAAGAAAATCCAGATATAAGAGATGAAATTGCATTCTTT
ATTCGTGAGCATCATGGAATTGGTGAAGATTCTGCTCCTGAAAATATGGAAGAAAGCACAACTCTTGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7GRA9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.544

95.335

0.825
  recA Latilactobacillus sakei subsp. sakei 23K

75.841

95.335

0.723
  recA Streptococcus mitis NCTC 12261

66.667

100

0.676
  recA Streptococcus mitis SK321

66.092

100

0.671
  recA Streptococcus pneumoniae D39

67.251

99.708

0.671
  recA Streptococcus pneumoniae Rx1

67.251

99.708

0.671
  recA Streptococcus pneumoniae R6

67.251

99.708

0.671
  recA Streptococcus pneumoniae TIGR4

67.251

99.708

0.671
  recA Streptococcus mutans UA159

66.862

99.417

0.665
  recA Lactococcus lactis subsp. cremoris KW2

67.665

97.376

0.659
  recA Streptococcus pyogenes NZ131

68.902

95.627

0.659
  recA Neisseria gonorrhoeae strain FA1090

65.951

95.044

0.627
  recA Neisseria gonorrhoeae MS11

65.951

95.044

0.627
  recA Neisseria gonorrhoeae MS11

65.951

95.044

0.627
  recA Ralstonia pseudosolanacearum GMI1000

67.732

91.254

0.618
  recA Vibrio cholerae strain A1552

62.388

97.668

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.388

97.668

0.609
  recA Helicobacter pylori strain NCTC11637

60.882

99.125

0.603
  recA Helicobacter pylori 26695

60.882

99.125

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.19

95.044

0.601
  recA Acinetobacter baylyi ADP1

63.354

93.878

0.595
  recA Acinetobacter baumannii D1279779

63.354

93.878

0.595
  recA Glaesserella parasuis strain SC1401

63.636

93.003

0.592
  recA Pseudomonas stutzeri DSM 10701

63.125

93.294

0.589
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.162

95.335

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.692

94.752

0.566