Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   JC777_RS13515 Genome accession   NZ_CP066184
Coordinates   2464448..2465686 (+) Length   412 a.a.
NCBI ID   WP_048723313.1    Uniprot ID   -
Organism   Bacillus cytotoxicus strain SM1.1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2459448..2470686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC777_RS13490 (JC777_13495) - 2460104..2460352 (+) 249 WP_012094876.1 DUF3243 domain-containing protein -
  JC777_RS13495 (JC777_13500) - 2460423..2461814 (-) 1392 WP_094398320.1 IS1182 family transposase -
  JC777_RS13500 (JC777_13505) - 2462052..2462837 (+) 786 WP_012094875.1 DUF3388 domain-containing protein -
  JC777_RS13505 (JC777_13510) - 2462859..2463785 (+) 927 WP_012094874.1 RodZ domain-containing protein -
  JC777_RS13510 (JC777_13515) pgsA 2463849..2464427 (+) 579 WP_012094873.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JC777_RS13515 (JC777_13520) cinA 2464448..2465686 (+) 1239 WP_048723313.1 competence/damage-inducible protein A Machinery gene
  JC777_RS13520 (JC777_13525) recA 2465829..2466860 (+) 1032 WP_012094871.1 recombinase RecA Machinery gene
  JC777_RS13525 (JC777_13530) rny 2467365..2468927 (+) 1563 WP_012094870.1 ribonuclease Y -
  JC777_RS13530 (JC777_13535) - 2469142..2469936 (+) 795 WP_012094869.1 TIGR00282 family metallophosphoesterase -
  JC777_RS13535 (JC777_13540) spoVS 2470084..2470344 (+) 261 WP_000404341.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45770.34 Da        Isoelectric Point: 6.4351

>NTDB_id=518208 JC777_RS13515 WP_048723313.1 2464448..2465686(+) (cinA) [Bacillus cytotoxicus strain SM1.1]
MNAEIIAVGTELLLGQITNTNAKFLSEKLASIGINVYYHTVVGDNTRRLQEAIRTAEKRANILIFTGGLGPTKDDLTKET
IASIVKEDLVYDEAALTSIREYFNRTGREFTENNKKQALVLKGSTVFANNHGMAPGMGLHKNEKVYILLPGPPKEMQPMY
NSYVDPFLRNVTTGEHIYSRVLRFFGIGESQLEVKVQDLIDNQTNPTIAPLASDGEVTLRLTAKHQNVEQAELLIQQVEH
LILERVGEFFYGYNEDFLHHKAIELLKKKGFTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHILQVPKET
LQTAGAVSEECARYLAENVKLLLKSDIGISFTGVAGPDASENKEPGTVFIGLAIKDEPTIVFPLCLSGSRQQIRERTVKY
GFYHLYKKLEEM

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=518208 JC777_RS13515 WP_048723313.1 2464448..2465686(+) (cinA) [Bacillus cytotoxicus strain SM1.1]
ATGAATGCCGAAATTATTGCGGTTGGAACAGAATTATTATTGGGGCAAATTACAAATACAAATGCGAAGTTTTTATCCGA
AAAATTAGCTTCTATTGGAATAAATGTGTATTATCATACTGTAGTAGGTGATAATACACGTCGGCTACAAGAGGCTATTC
GCACAGCTGAAAAACGTGCAAACATATTGATTTTTACTGGCGGACTCGGACCAACAAAAGATGATTTAACGAAAGAAACC
ATTGCATCGATTGTTAAGGAAGACCTTGTTTATGATGAAGCGGCACTAACATCAATTCGTGAATATTTTAATCGAACGGG
TCGTGAGTTCACAGAGAATAATAAGAAACAAGCACTCGTTTTGAAGGGTTCAACTGTATTTGCAAATAATCACGGTATGG
CGCCAGGCATGGGATTACATAAAAATGAAAAAGTGTATATTTTATTGCCAGGTCCACCGAAAGAAATGCAACCAATGTAT
AATAGCTATGTAGATCCATTCTTGCGCAATGTAACAACTGGTGAACATATTTATTCTCGTGTCCTTCGTTTTTTCGGTAT
TGGTGAATCGCAGTTAGAAGTAAAAGTACAAGATTTAATTGACAACCAAACGAATCCGACAATTGCACCGCTAGCTTCTG
ATGGAGAGGTAACGTTGCGATTAACCGCGAAACATCAGAATGTAGAGCAAGCGGAGTTATTAATTCAGCAGGTAGAACAT
TTAATCTTAGAGAGAGTAGGCGAATTTTTTTACGGCTACAATGAAGATTTCCTTCACCATAAGGCAATTGAGTTATTGAA
GAAAAAAGGTTTCACTCTAGCCTGTGCTGAAAGTTTAACAGGCGGTCTTTTTGGCAATCAAGTAACGGAAAATGCTGGTG
TGTCTTCTGTTTTTAAAGGTGGCGTAATTTGCTATCACAATGATGTAAAACAGCATATTTTACAAGTTCCTAAAGAGACT
TTACAAACGGCAGGTGCGGTGAGTGAAGAATGTGCGCGTTATCTTGCTGAAAATGTAAAATTACTTTTAAAATCGGATAT
TGGAATTAGTTTTACGGGGGTCGCAGGACCGGATGCTTCAGAAAACAAAGAACCTGGAACTGTATTTATCGGTTTAGCAA
TCAAAGATGAACCGACAATAGTTTTTCCGCTTTGTTTAAGTGGGAGTCGTCAGCAAATTCGTGAACGTACTGTGAAATAT
GGATTTTATCATTTATACAAAAAGCTAGAAGAGATGTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

57.282

100

0.573
  cinA Streptococcus mitis SK321

46.301

100

0.471
  cinA Streptococcus pneumoniae TIGR4

46.301

100

0.471
  cinA Streptococcus pneumoniae R6

45.823

100

0.466
  cinA Streptococcus pneumoniae Rx1

45.823

100

0.466
  cinA Streptococcus pneumoniae D39

45.585

100

0.464
  cinA Streptococcus mitis NCTC 12261

45.346

100

0.461
  cinA Streptococcus mutans UA159

45.074

98.544

0.444
  cinA Streptococcus suis isolate S10

40.849

91.505

0.374