Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SSIL_RS15135 Genome accession   NC_018065
Coordinates   2977416..2978492 (-) Length   358 a.a.
NCBI ID   WP_014824449.1    Uniprot ID   -
Organism   Solibacillus silvestris StLB046     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2972416..2983492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSIL_RS15110 (SSIL_2916) - 2972730..2973683 (-) 954 WP_014824444.1 glycosyltransferase family 2 protein -
  SSIL_RS15115 (SSIL_2917) - 2973711..2974622 (-) 912 WP_014824445.1 ATP-grasp fold amidoligase family protein -
  SSIL_RS15120 (SSIL_2918) rny 2975132..2976685 (-) 1554 WP_014824446.1 ribonuclease Y -
  SSIL_RS15125 (SSIL_2919) - 2976978..2977172 (-) 195 WP_041865776.1 hypothetical protein -
  SSIL_RS15130 (SSIL_2920) - 2977192..2977416 (-) 225 WP_014824448.1 hypothetical protein -
  SSIL_RS15135 (SSIL_2921) recA 2977416..2978492 (-) 1077 WP_014824449.1 recombinase RecA Machinery gene
  SSIL_RS15140 (SSIL_2922) cinA 2978659..2979918 (-) 1260 WP_014824450.1 competence/damage-inducible protein A Machinery gene
  SSIL_RS15145 (SSIL_2923) pgsA 2980200..2980778 (-) 579 WP_008403198.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SSIL_RS15150 (SSIL_2924) - 2980825..2981718 (-) 894 WP_041865907.1 helix-turn-helix domain-containing protein -
  SSIL_RS15155 (SSIL_2925) - 2981781..2982569 (-) 789 WP_008403200.1 DUF3388 domain-containing protein -
  SSIL_RS15160 (SSIL_2926) - 2982837..2983094 (-) 258 WP_008403201.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38987.15 Da        Isoelectric Point: 4.7179

>NTDB_id=51814 SSIL_RS15135 WP_014824449.1 2977416..2978492(-) (recA) [Solibacillus silvestris StLB046]
MSDRKAALDMALKQIEKQFGKGSVMKLGENSNRHMETTSSGSIAIDAALGIGGYPRGRIVEVYGPESSGKTTVTLHAIAE
IQANGGTAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGVINKSNTLAIFINQVREKIGVMFGNPETTTGGRALKFYSSIRLEVRRGEAIKQGTEIIGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIVDIGAELDIIQKSGSWYSYNSERIGQGRENVKQFFKENPAIKEEVTEK
IRQHFGIGELGYTIGANDTTEEEELDELELFEDEKDKE

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=51814 SSIL_RS15135 WP_014824449.1 2977416..2978492(-) (recA) [Solibacillus silvestris StLB046]
TTGAGCGATCGTAAAGCAGCATTAGATATGGCGTTAAAACAAATAGAAAAACAATTCGGTAAAGGTTCTGTCATGAAGTT
AGGTGAAAACTCGAACCGTCATATGGAGACAACTTCATCAGGCTCTATCGCAATTGATGCAGCATTAGGTATAGGCGGCT
ACCCGCGCGGACGTATTGTAGAAGTTTACGGACCGGAATCATCTGGTAAAACAACAGTTACATTACATGCCATCGCAGAA
ATTCAGGCAAACGGCGGTACGGCAGCGTTTATCGATGCTGAGCACGCACTTGACCCGGTATATGCACAAAAATTAGGCGT
TAATATTGACGAATTATTATTATCACAGCCGGATACAGGTGAACAAGCACTTGAAATCGCAGAAGCATTAGTACGTTCTG
GTGCGATTGATATTATCGTAATCGACTCTGTAGCAGCATTAGTGCCAAAAGCCGAGATCGAGGGCGAAATGGGTGACTCG
CACATGGGTCTCCAAGCGCGTTTAATGTCACAGGCATTACGTAAATTATCAGGTGTTATTAATAAATCAAATACGCTTGC
TATCTTCATCAACCAAGTTCGTGAAAAAATCGGTGTTATGTTCGGTAACCCGGAAACAACAACAGGTGGACGTGCCCTTA
AATTCTACTCTTCTATCCGTTTAGAAGTACGTCGCGGTGAAGCGATTAAGCAAGGTACAGAAATTATCGGGAACAAAACG
AAAATCAAAGTCGTAAAAAATAAAGTAGCACCACCATTCCGTACAGCAGAAGTGGATATTATGTACGGCGAAGGGATTTC
AAAAGAAGGCGAAATCGTCGACATCGGTGCAGAACTGGATATCATCCAAAAGAGCGGTTCTTGGTATTCATACAACAGCG
AACGAATCGGCCAAGGTCGTGAAAATGTAAAACAATTCTTCAAAGAAAACCCTGCAATCAAAGAAGAAGTGACAGAAAAA
ATCCGTCAACACTTCGGTATCGGCGAATTAGGCTACACAATCGGCGCCAACGATACAACTGAAGAAGAAGAACTGGACGA
ACTAGAACTATTCGAAGATGAAAAAGATAAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.651

91.341

0.746
  recA Latilactobacillus sakei subsp. sakei 23K

68.966

97.207

0.67
  recA Neisseria gonorrhoeae MS11

65.33

97.486

0.637
  recA Neisseria gonorrhoeae MS11

65.33

97.486

0.637
  recA Neisseria gonorrhoeae strain FA1090

65.33

97.486

0.637
  recA Streptococcus mutans UA159

65.029

96.648

0.628
  recA Acinetobacter baylyi ADP1

63.953

96.089

0.615
  recA Glaesserella parasuis strain SC1401

62.108

98.045

0.609
  recA Streptococcus pyogenes NZ131

66.463

91.62

0.609
  recA Acinetobacter baumannii D1279779

61.891

97.486

0.603
  recA Streptococcus pneumoniae D39

65.152

92.179

0.601
  recA Streptococcus mitis NCTC 12261

65.152

92.179

0.601
  recA Streptococcus pneumoniae Rx1

65.152

92.179

0.601
  recA Streptococcus pneumoniae R6

65.152

92.179

0.601
  recA Streptococcus pneumoniae TIGR4

65.152

92.179

0.601
  recA Streptococcus mitis SK321

64.848

92.179

0.598
  recA Ralstonia pseudosolanacearum GMI1000

64.939

91.62

0.595
  recA Lactococcus lactis subsp. cremoris KW2

64.545

92.179

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.83

91.899

0.587
  recA Vibrio cholerae strain A1552

65.015

90.223

0.587
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.015

90.223

0.587
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.577

91.061

0.57
  recA Helicobacter pylori strain NCTC11637

62.195

91.62

0.57
  recA Helicobacter pylori 26695

61.89

91.62

0.567
  recA Pseudomonas stutzeri DSM 10701

62.848

90.223

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.25

89.385

0.547

Multiple sequence alignment