Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   SSIL_RS15140 Genome accession   NC_018065
Coordinates   2978659..2979918 (-) Length   419 a.a.
NCBI ID   WP_014824450.1    Uniprot ID   F2F2P7
Organism   Solibacillus silvestris StLB046     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2973659..2984918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSIL_RS15115 (SSIL_2917) - 2973711..2974622 (-) 912 WP_014824445.1 ATP-grasp fold amidoligase family protein -
  SSIL_RS15120 (SSIL_2918) rny 2975132..2976685 (-) 1554 WP_014824446.1 ribonuclease Y -
  SSIL_RS15125 (SSIL_2919) - 2976978..2977172 (-) 195 WP_041865776.1 hypothetical protein -
  SSIL_RS15130 (SSIL_2920) - 2977192..2977416 (-) 225 WP_014824448.1 hypothetical protein -
  SSIL_RS15135 (SSIL_2921) recA 2977416..2978492 (-) 1077 WP_014824449.1 recombinase RecA Machinery gene
  SSIL_RS15140 (SSIL_2922) cinA 2978659..2979918 (-) 1260 WP_014824450.1 competence/damage-inducible protein A Machinery gene
  SSIL_RS15145 (SSIL_2923) pgsA 2980200..2980778 (-) 579 WP_008403198.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SSIL_RS15150 (SSIL_2924) - 2980825..2981718 (-) 894 WP_041865907.1 helix-turn-helix domain-containing protein -
  SSIL_RS15155 (SSIL_2925) - 2981781..2982569 (-) 789 WP_008403200.1 DUF3388 domain-containing protein -
  SSIL_RS15160 (SSIL_2926) - 2982837..2983094 (-) 258 WP_008403201.1 DUF3243 domain-containing protein -
  SSIL_RS15165 (SSIL_2927) ymfI 2983142..2983870 (-) 729 WP_008403202.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45845.43 Da        Isoelectric Point: 4.7567

>NTDB_id=51815 SSIL_RS15140 WP_014824450.1 2978659..2979918(-) (cinA) [Solibacillus silvestris StLB046]
MNAEIIAVGSELLLGQIANTNAKFISSQLSELGINVYYHTVVGDNEARLLEAIKIAEQRADVIIFSGGLGPTKDDLTKEA
IAKHLNRTLVFDETALFAIEEFFSKQRRPMTENNRKQALVLDGCDVLLNQHGMAPGMFLEENDRIYILLPGPPKELEPMF
QYETKPKLAALLHDGGVILSHVLRFYGIGEADLETRIQSILEEQTNPTVAPLASDGEVTLRITAKAQNEQQAFRLIELKK
REILDIVGEYYYGVNDESLGFKLVQMLLENELTVSAAESLTAGLFQSELAEIPGVGSALIGGVVTYTKEAKIKHLGVSGE
LLDEYGIVSSECAAAMATQVREKFGTDIGVGLTGAAGPGDHDGQPAGSIWVGIKIGDTEPLTYRLQLTGSRNTNRIRAVK
FTFSYLMRELANQGYKKLI

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=51815 SSIL_RS15140 WP_014824450.1 2978659..2979918(-) (cinA) [Solibacillus silvestris StLB046]
ATGAATGCAGAAATTATAGCGGTAGGATCGGAATTATTATTAGGACAAATCGCCAACACGAATGCGAAATTTATTTCGAG
CCAGCTTTCGGAACTTGGCATTAATGTTTATTATCATACAGTTGTAGGAGATAACGAGGCGCGGCTTCTAGAGGCGATTA
AAATTGCGGAACAGCGCGCGGATGTAATTATTTTCTCAGGTGGTTTAGGTCCGACAAAGGATGATCTGACGAAGGAAGCG
ATTGCGAAGCATTTGAATCGTACGTTAGTGTTTGATGAAACGGCGCTGTTTGCGATTGAGGAATTTTTCTCGAAGCAAAG
ACGACCGATGACGGAAAACAACCGAAAACAGGCGCTAGTACTGGATGGCTGCGATGTCTTGTTGAATCAGCATGGGATGG
CACCGGGGATGTTTTTGGAGGAAAATGACCGCATTTATATTTTACTGCCGGGTCCGCCAAAAGAACTTGAGCCGATGTTC
CAATATGAAACGAAGCCAAAACTTGCGGCACTTCTGCATGACGGCGGCGTAATTTTATCGCATGTACTACGTTTTTACGG
GATCGGTGAAGCAGATCTGGAAACCCGTATACAGAGTATTTTGGAGGAACAGACAAATCCTACAGTTGCCCCGCTTGCTT
CAGATGGTGAAGTTACATTGCGCATTACGGCAAAAGCGCAAAACGAACAACAGGCATTCCGTCTGATCGAGTTAAAGAAA
CGTGAAATTCTCGATATCGTCGGAGAATACTATTACGGTGTAAATGATGAATCATTAGGTTTCAAGCTTGTGCAAATGCT
TTTGGAAAATGAACTGACAGTTTCCGCTGCCGAAAGTTTAACGGCCGGTCTGTTTCAATCCGAGCTGGCAGAAATTCCGG
GTGTCGGATCTGCATTAATCGGCGGTGTTGTGACGTATACGAAAGAAGCGAAAATTAAGCACCTCGGTGTTTCCGGTGAA
TTGCTTGATGAATACGGCATCGTCAGCAGTGAATGTGCAGCGGCAATGGCGACACAAGTCCGTGAAAAGTTTGGTACAGA
TATCGGCGTTGGGCTGACGGGAGCAGCAGGACCGGGTGATCATGACGGACAGCCTGCAGGATCAATCTGGGTTGGCATTA
AGATCGGTGACACAGAACCGCTCACGTACCGACTGCAATTAACCGGTTCAAGAAATACGAACCGAATCCGCGCAGTGAAG
TTTACGTTCAGCTATTTAATGAGGGAATTAGCGAATCAAGGATACAAAAAGCTGATTTAG

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(260-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F2F2P7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.338

98.091

0.504
  cinA Streptococcus mutans UA159

43.855

99.045

0.434
  cinA Streptococcus mitis SK321

45.052

91.647

0.413
  cinA Streptococcus mitis NCTC 12261

44.792

91.647

0.411
  cinA Streptococcus pneumoniae TIGR4

44.531

91.647

0.408
  cinA Streptococcus pneumoniae Rx1

44.271

91.647

0.406
  cinA Streptococcus pneumoniae R6

44.271

91.647

0.406
  cinA Streptococcus pneumoniae D39

44.01

91.647

0.403

Multiple sequence alignment