Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ITG10_RS05145 Genome accession   NZ_CP066149
Coordinates   1193967..1195007 (-) Length   346 a.a.
NCBI ID   WP_248386740.1    Uniprot ID   -
Organism   Vibrio sp. ED004     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1188967..1200007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG10_RS05130 (ITG10_05060) csrA 1189363..1189560 (-) 198 WP_004415691.1 carbon storage regulator CsrA -
  ITG10_RS05135 (ITG10_05065) - 1189653..1190834 (-) 1182 WP_017632915.1 aspartate kinase -
  ITG10_RS05140 (ITG10_05070) alaS 1191053..1193635 (-) 2583 WP_017632914.1 alanine--tRNA ligase -
  ITG10_RS05145 (ITG10_05075) recA 1193967..1195007 (-) 1041 WP_248386740.1 recombinase RecA Machinery gene
  ITG10_RS05150 (ITG10_05080) pncC 1195147..1195641 (-) 495 WP_017633209.1 nicotinamide-nucleotide amidase -
  ITG10_RS05155 (ITG10_05085) mutS 1195766..1198327 (+) 2562 WP_017633210.1 DNA mismatch repair protein MutS -
  ITG10_RS05160 (ITG10_05090) rpoS 1198462..1199442 (-) 981 WP_017633211.1 RNA polymerase sigma factor RpoS Regulator

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37344.79 Da        Isoelectric Point: 4.8285

>NTDB_id=517866 ITG10_RS05145 WP_248386740.1 1193967..1195007(-) (recA) [Vibrio sp. ED004]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA
AAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNE
TRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKLVEKAGAWYSYKGDKIGQGKANAGKYLRENPEVALEIDT
KLRELLLTPATLEEKDVEQEEENEEL

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=517866 ITG10_RS05145 WP_248386740.1 1193967..1195007(-) (recA) [Vibrio sp. ED004]
ATGGACGAGAATAAACAAAAAGCGTTAGCCGCAGCCCTTGGTCAGATTGAAAAGCAATTTGGTAAAGGTTCTATCATGCG
TCTTGGTGATAACCGCACAATGGACGTAGAAACTATTTCTACTGGTTCTCTATCTCTAGATATCGCACTAGGTGCTGGTG
GCCTACCGATGGGACGTATCGTAGAAGTTTACGGTCCAGAATCATCAGGTAAAACAACGTTAACTCTTGAGCTTATTGCT
GCAGCACAAAAAGTGGGCAAGACGTGTGCTTTCGTTGATGCGGAACACGCACTAGACCCTATCTACGCTCAAAAGCTTGG
TGTTGATATCGATGCGCTTCTTGTTTCTCAACCAGATACGGGTGAGCAAGCGTTAGAAATCTGTGATGCACTTGCTCGTT
CAGGTGCAATCGATGTACTTGTTATTGACTCAGTAGCAGCATTAACACCAAAAGCAGAAATCGAAGGCGAAATGGGTGAT
AGCCACATGGGGCTTCAGGCTCGTATGCTTTCTCAAGCGATGCGTAAGCTAACTGGTAACCTTAAGCAGTCTAACTGTAT
GGCTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACAACAACGGGTGGTAACGCTC
TTAAGTTCTACGCATCTGTTCGTCTTGATATCCGCCGTACTGGTGCGATCAAAGATGGTGATGAGGTTGTTGGTAACGAA
ACGCGTATCAAGGTTGTTAAGAACAAGATTGCTGCACCGTTTAAACAAGCTGAAACTCAAATCCTATACGGCAAAGGCTT
TAACCGTGAAGGTGAGCTTATCGATTTAGGTGTTAAGAACAAGCTAGTAGAAAAAGCGGGCGCTTGGTACAGCTACAAGG
GTGATAAGATCGGCCAAGGTAAAGCTAACGCTGGTAAATACTTACGTGAAAACCCAGAAGTTGCTCTAGAGATCGACACT
AAACTTCGTGAGTTGCTACTAACTCCTGCTACTCTTGAAGAGAAAGACGTAGAACAAGAAGAAGAAAACGAAGAGCTATA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

88.889

96.243

0.855
  recA Vibrio cholerae O1 biovar El Tor strain E7946

88.889

96.243

0.855
  recA Pseudomonas stutzeri DSM 10701

74.194

98.555

0.731
  recA Acinetobacter baumannii D1279779

73.099

98.844

0.723
  recA Acinetobacter baylyi ADP1

71.676

100

0.717
  recA Neisseria gonorrhoeae MS11

67.529

100

0.679
  recA Neisseria gonorrhoeae MS11

67.529

100

0.679
  recA Neisseria gonorrhoeae strain FA1090

67.529

100

0.679
  recA Glaesserella parasuis strain SC1401

66.761

100

0.679
  recA Ralstonia pseudosolanacearum GMI1000

71.429

91.04

0.65
  recA Streptococcus pneumoniae R6

59.302

99.422

0.59
  recA Streptococcus pneumoniae TIGR4

59.302

99.422

0.59
  recA Streptococcus pneumoniae Rx1

59.302

99.422

0.59
  recA Streptococcus pneumoniae D39

59.302

99.422

0.59
  recA Streptococcus mutans UA159

58.166

100

0.587
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

92.197

0.587
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

92.775

0.584
  recA Streptococcus mitis SK321

61.92

93.353

0.578
  recA Helicobacter pylori strain NCTC11637

61.538

93.931

0.578
  recA Helicobacter pylori 26695

61.231

93.931

0.575
  recA Streptococcus mitis NCTC 12261

61.61

93.353

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.819

95.665

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

92.775

0.569
  recA Streptococcus pyogenes NZ131

60.308

93.931

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

60.436

92.775

0.561
  recA Lactococcus lactis subsp. cremoris KW2

59.443

93.353

0.555