Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   ITG10_RS05160 Genome accession   NZ_CP066149
Coordinates   1198462..1199442 (-) Length   326 a.a.
NCBI ID   WP_017633211.1    Uniprot ID   -
Organism   Vibrio sp. ED004     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1193462..1204442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG10_RS05145 (ITG10_05075) recA 1193967..1195007 (-) 1041 WP_248386740.1 recombinase RecA Machinery gene
  ITG10_RS05150 (ITG10_05080) pncC 1195147..1195641 (-) 495 WP_017633209.1 nicotinamide-nucleotide amidase -
  ITG10_RS05155 (ITG10_05085) mutS 1195766..1198327 (+) 2562 WP_017633210.1 DNA mismatch repair protein MutS -
  ITG10_RS05160 (ITG10_05090) rpoS 1198462..1199442 (-) 981 WP_017633211.1 RNA polymerase sigma factor RpoS Regulator
  ITG10_RS05165 (ITG10_05095) nlpD 1199541..1200455 (-) 915 WP_017633212.1 murein hydrolase activator NlpD -
  ITG10_RS05170 (ITG10_05100) - 1200491..1201117 (-) 627 WP_017633213.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  ITG10_RS05175 (ITG10_05105) surE 1201118..1201861 (-) 744 WP_017633214.1 5'/3'-nucleotidase SurE -
  ITG10_RS05180 (ITG10_05110) truD 1201937..1202983 (-) 1047 WP_017633215.1 tRNA pseudouridine(13) synthase TruD -
  ITG10_RS05185 (ITG10_05115) ispF 1203006..1203485 (-) 480 WP_026084485.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ITG10_RS05190 (ITG10_05120) ispD 1203488..1204189 (-) 702 WP_017633217.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 37246.48 Da        Isoelectric Point: 5.1506

>NTDB_id=517868 ITG10_RS05160 WP_017633211.1 1198462..1199442(-) (rpoS) [Vibrio sp. ED004]
MSISNAVTKEEFDLDQATTEPEALGKVKRTVTKKTEAKEEVEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide


Download         Length: 981 bp        

>NTDB_id=517868 ITG10_RS05160 WP_017633211.1 1198462..1199442(-) (rpoS) [Vibrio sp. ED004]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTGACCAAGCAACCACGGAACCGGAAGCTCTTGGAAAAGT
AAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGTTGAAGTTACGTCTAAAAGCTTAGATGCCACTCAACTGT
ATCTAGGCGAAATCGGTTTCTCACCACTACTAACCGCAGAAGAAGAAGTGCTTTACGCACGTCGAGCTCTACGCGGTGAT
GAAGCAGCACGTAAACGCATGATCGAAAGTAACCTGCGTTTAGTGGTAAAAATTTCTCGTCGTTATAGCAACCGTGGCTT
GGCACTTCTCGATCTAATCGAAGAAGGCAACCTAGGCTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAGCGTGGCTTCC
GCTTTTCAACTTACGCAACATGGTGGATTCGTCAAACTATTGAACGTGCGTTGATGAATCAGACTCGCACCATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACGGCAAGAGAGCTATCACAAAAGCTTGACCACGAACCAAC
AGCTGAAGAGATCGCTTCTAAGCTAGATAAGCCAGTTGGTGATGTGAGCAAGATGCTTCGTCTAAACGAAAGAGTGAGCT
CTGTAGATACGCCAATTGGTGGTGACGGTGAGAAAGCGCTGTTGGATATTATTCCAGACATCAACAATTCAGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCACTGATTTTCTGGCTTGATGAACTGAATCCGAAGCAGAAAGAAGTGCT
TGCACGTCGATTTGGACTGTTAGGTTATGAACCGTCAACGTTAGAAGAAGTTGGCCGTGAAATCAGCCTGACTCGTGAGC
GAGTTCGTCAAATCCAAGTTGAAGGTCTTCGTCGTTTACGTGAGATTCTGATCAAGCAAGGTCTGAACATGGAAAACTTG
TTCAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(49-82)

Sigma-70 region 2 (Sigma70_r2)

(87-156)

Sigma-70 region 3 (Sigma70_r3)

(167-240)

Sigma-70, region 4 (Sigma70_r4)

(255-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

81.306

100

0.84