Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DESTI_RS05870 Genome accession   NC_018025
Coordinates   1395407..1396510 (-) Length   367 a.a.
NCBI ID   WP_014809042.1    Uniprot ID   I4C2U8
Organism   Desulfomonile tiedjei DSM 6799     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1390407..1401510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DESTI_RS05850 (Desti_1172) - 1391547..1392251 (-) 705 WP_014809038.1 hypothetical protein -
  DESTI_RS05855 (Desti_1173) - 1392255..1393532 (-) 1278 WP_014809039.1 sulfite exporter TauE/SafE family protein -
  DESTI_RS05860 (Desti_1174) - 1393787..1394206 (-) 420 WP_014809040.1 response regulator -
  DESTI_RS05865 (Desti_1175) pilT 1394314..1395417 (-) 1104 WP_014809041.1 type IV pilus twitching motility protein PilT Machinery gene
  DESTI_RS05870 (Desti_1176) recA 1395407..1396510 (-) 1104 WP_014809042.1 recombinase RecA Machinery gene
  DESTI_RS05875 (Desti_1177) - 1396877..1397815 (+) 939 WP_014809043.1 DUF1848 domain-containing protein -
  DESTI_RS05880 (Desti_1178) - 1397818..1398957 (+) 1140 WP_041285996.1 energy transducer TonB -
  DESTI_RS05885 (Desti_1179) gcvH 1399348..1399740 (-) 393 WP_014809045.1 glycine cleavage system protein GcvH -
  DESTI_RS05890 (Desti_1180) - 1399990..1400256 (+) 267 WP_014809046.1 hypothetical protein -
  DESTI_RS05895 (Desti_1182) - 1400459..1401448 (-) 990 WP_014809048.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39359.88 Da        Isoelectric Point: 5.5060

>NTDB_id=51739 DESTI_RS05870 WP_014809042.1 1395407..1396510(-) (recA) [Desulfomonile tiedjei DSM 6799]
MAKPKKGKDLIEGNLPENEKARAVEVAVSQIERQFGRGAIMKLGSGGVIPNVQAISTGSLGLDVAIGIGGIPKGRVTEIF
GPESSGKTTLCLHVIAEAQRLGGFAAFVDAEHALDIGYAKKLGVNTDELLVSQPDTGEQALDITEILVRSGAMDVVVIDS
VAALVPRAEIEGDMGDSHMGLQARLMSQALRKLTAAIARSHTAVIFTNQIRQKIGIMFGNPETTTGGNALKFFASLRLDI
RRVAGIKEGENVIGSRTRVKVVKNKLSPPFNQVEFDIMYNEGISIAGEVIDMGVDLGIVDKSGAWYSYGDERIGQGRENA
KQFMRDNPETMETIKSRILEHKGIAMQGKSDDSNENLLHEAGDYDGS

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=51739 DESTI_RS05870 WP_014809042.1 1395407..1396510(-) (recA) [Desulfomonile tiedjei DSM 6799]
ATGGCGAAGCCTAAGAAAGGCAAAGACTTAATCGAAGGTAATCTGCCCGAGAACGAAAAAGCGCGGGCTGTCGAAGTTGC
GGTCTCGCAGATTGAAAGGCAATTCGGCAGAGGCGCTATTATGAAACTGGGGAGCGGTGGTGTCATCCCCAATGTCCAGG
CGATTTCTACAGGCTCTCTCGGACTGGACGTGGCCATCGGGATTGGTGGCATCCCAAAAGGGAGGGTCACGGAAATTTTC
GGGCCGGAATCTTCCGGAAAAACTACCTTATGCCTTCATGTGATTGCTGAAGCCCAGAGGTTGGGCGGTTTCGCCGCATT
CGTGGACGCCGAACATGCACTCGATATCGGGTACGCGAAAAAACTCGGCGTCAATACCGATGAATTACTGGTCTCGCAGC
CTGATACGGGCGAACAAGCTCTCGATATCACAGAAATCCTGGTAAGATCGGGTGCAATGGACGTTGTGGTCATAGATTCC
GTAGCTGCTCTCGTACCCCGAGCTGAGATCGAAGGCGATATGGGTGATTCCCATATGGGGCTGCAGGCGAGACTCATGTC
TCAGGCCCTGAGAAAATTGACCGCTGCGATAGCCCGATCTCACACAGCCGTGATATTCACCAACCAGATCAGGCAGAAGA
TTGGAATCATGTTCGGTAATCCGGAGACCACCACCGGCGGTAATGCACTCAAATTTTTCGCATCCTTGCGACTGGATATC
CGCAGAGTGGCGGGAATCAAAGAGGGCGAAAACGTCATTGGGTCCCGGACCAGAGTGAAGGTGGTAAAGAACAAGTTGAG
CCCTCCCTTCAATCAGGTGGAATTCGATATCATGTACAATGAGGGCATTTCCATAGCCGGTGAAGTAATCGATATGGGAG
TGGACCTGGGAATTGTCGACAAGTCCGGTGCATGGTATTCGTACGGTGATGAGCGTATAGGGCAAGGCAGAGAAAACGCA
AAGCAATTCATGCGAGATAATCCGGAAACAATGGAGACGATTAAGTCCAGGATTCTGGAACATAAAGGGATTGCAATGCA
AGGCAAGTCCGACGACTCAAACGAAAATCTCCTGCATGAGGCCGGTGACTACGATGGATCTTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I4C2U8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

65.031

88.828

0.578
  recA Bacillus subtilis subsp. subtilis str. 168

62.84

90.191

0.567
  recA Glaesserella parasuis strain SC1401

58.263

97.275

0.567
  recA Neisseria gonorrhoeae MS11

61.176

92.643

0.567
  recA Neisseria gonorrhoeae MS11

61.176

92.643

0.567
  recA Neisseria gonorrhoeae strain FA1090

61.176

92.643

0.567
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.526

93.188

0.564
  recA Ralstonia pseudosolanacearum GMI1000

65.094

86.649

0.564
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.928

87.466

0.55
  recA Vibrio cholerae strain A1552

62.928

87.466

0.55
  recA Helicobacter pylori strain NCTC11637

61.585

89.373

0.55
  recA Helicobacter pylori 26695

61.28

89.373

0.548
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.281

91.008

0.54
  recA Acinetobacter baylyi ADP1

60.308

88.556

0.534
  recA Streptococcus mitis NCTC 12261

57.018

93.188

0.531
  recA Streptococcus mitis SK321

57.018

93.188

0.531
  recA Acinetobacter baumannii D1279779

60.559

87.738

0.531
  recA Streptococcus pneumoniae TIGR4

56.358

94.278

0.531
  recA Streptococcus pneumoniae Rx1

56.358

94.278

0.531
  recA Streptococcus pneumoniae D39

56.358

94.278

0.531
  recA Streptococcus pneumoniae R6

56.358

94.278

0.531
  recA Streptococcus mutans UA159

57.704

90.191

0.52
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.824

88.011

0.518
  recA Latilactobacillus sakei subsp. sakei 23K

56.495

90.191

0.51
  recA Streptococcus pyogenes NZ131

57.231

88.556

0.507
  recA Lactococcus lactis subsp. cremoris KW2

54.867

92.371

0.507

Multiple sequence alignment