Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I6H76_RS06155 Genome accession   NZ_CP065994
Coordinates   1187331..1188485 (+) Length   384 a.a.
NCBI ID   WP_015695804.1    Uniprot ID   -
Organism   Streptococcus infantarius strain FDAARGOS_1019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1182331..1193485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H76_RS06135 (I6H76_06135) ruvA 1183406..1183999 (+) 594 WP_006531419.1 Holliday junction branch migration protein RuvA -
  I6H76_RS06140 (I6H76_06140) - 1184029..1184586 (+) 558 WP_043878298.1 DNA-3-methyladenine glycosylase I -
  I6H76_RS06145 (I6H76_06145) - 1184709..1185911 (+) 1203 WP_006531417.1 MFS transporter -
  I6H76_RS06150 (I6H76_06150) cinA 1186025..1187284 (+) 1260 WP_006531416.1 competence/damage-inducible protein A Machinery gene
  I6H76_RS06155 (I6H76_06155) recA 1187331..1188485 (+) 1155 WP_015695804.1 recombinase RecA Machinery gene
  I6H76_RS06160 (I6H76_06160) spx 1188683..1189081 (+) 399 WP_004233512.1 transcriptional regulator Spx -
  I6H76_RS06165 (I6H76_06165) - 1189403..1189672 (+) 270 WP_003066890.1 IreB family regulatory phosphoprotein -
  I6H76_RS06170 (I6H76_06170) ruvX 1189669..1190088 (+) 420 WP_006531414.1 Holliday junction resolvase RuvX -
  I6H76_RS06175 (I6H76_06175) - 1190121..1190438 (+) 318 WP_006531413.1 DUF1292 domain-containing protein -
  I6H76_RS06180 (I6H76_06180) - 1190701..1192290 (+) 1590 WP_014295447.1 membrane protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41366.06 Da        Isoelectric Point: 4.9865

>NTDB_id=516142 I6H76_RS06155 WP_015695804.1 1187331..1188485(+) (recA) [Streptococcus infantarius strain FDAARGOS_1019]
MAKKTKKTETITKKFGDERKKALDDALKLIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRG
NTQIKGTGDQKDSNIGKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTGELIKIASDLDIIKKAGAWFSYNGEKIGQGSE
NAKKYLADHPEIFDEIDHKVRVHYGLVEETEDEKAAKLSEESAVTTENVDEVILDLDDAIEIEE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=516142 I6H76_RS06155 WP_015695804.1 1187331..1188485(+) (recA) [Streptococcus infantarius strain FDAARGOS_1019]
TTGGCTAAAAAGACAAAGAAAACAGAAACTATCACGAAGAAATTCGGTGATGAGCGTAAAAAAGCACTTGATGATGCTTT
GAAATTAATTGAAAAAGATTTTGGTAAGGGAGCTGTTATGCGCCTTGGCGAACGCGCTGAACAAAAAGTTCAAGTGATGA
GTTCAGGTAGTTTGGCTCTTGATATCGCTCTTGGTGCAGGTGGTTACCCTAAAGGACGTATCATTGAAATCTATGGTCCT
GAAAGTTCAGGTAAAACAACTGTTGCCCTTCATGCTGTAGCACAAGCTCAAAAAGAAGGCGGTATCGCAGCCTTTATCGA
TGCTGAACATGCCCTTGACCCAGCTTATGCAGCAGCCCTTGGTGTTAATATTGATGAACTTCTTTTGTCACAACCTGATT
CAGGAGAACAAGGTCTTGAAATCGCTGGAAAATTGATTGATTCAGGTGCGGTTGATCTTGTTGTTGTCGACTCTGTTGCA
GCTCTTGTTCCACGTGCCGAAATCGATGGTGATATTGGTGATAACCACGTTGGTTTGCAAGCTCGTATGATGAGTCAAGC
TATGCGTAAACTATCAGCTTCTATCAATAAAACAAAAACAATTGCCATCTTTATCAACCAATTGCGTGAAAAAGTTGGTG
TTATGTTTGGTAACCCAGAAACTACACCTGGTGGACGTGCCCTTAAATTCTACTCTTCAGTTCGTCTAGATGTGCGAGGA
AACACACAAATCAAAGGTACTGGTGATCAAAAAGATAGCAACATTGGTAAAGAAACTAAAATCAAAGTTGTTAAAAACAA
AGTTGCTCCACCATTTAAAACTGCTGAAGTGGAAATCATGTATGGTGAAGGAATTTCACGCACTGGTGAATTGATTAAAA
TCGCTAGTGATTTGGATATCATTAAAAAAGCTGGTGCTTGGTTCTCTTACAATGGTGAGAAGATTGGTCAAGGTTCTGAA
AATGCTAAGAAATATTTGGCAGATCACCCAGAAATCTTTGACGAAATCGACCACAAAGTTCGTGTTCATTATGGACTTGT
TGAAGAAACTGAAGATGAAAAAGCAGCAAAACTTTCTGAAGAATCAGCAGTAACTACTGAAAATGTAGATGAAGTTATTC
TTGATTTGGATGATGCGATTGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

89.583

100

0.896
  recA Streptococcus mutans UA159

88.372

100

0.891
  recA Streptococcus mitis NCTC 12261

86.423

99.74

0.862
  recA Streptococcus pneumoniae D39

85.455

100

0.857
  recA Streptococcus pneumoniae Rx1

85.455

100

0.857
  recA Streptococcus pneumoniae R6

85.455

100

0.857
  recA Streptococcus pneumoniae TIGR4

85.455

100

0.857
  recA Streptococcus mitis SK321

85.677

100

0.857
  recA Lactococcus lactis subsp. cremoris KW2

78

91.146

0.711
  recA Latilactobacillus sakei subsp. sakei 23K

68.555

91.927

0.63
  recA Bacillus subtilis subsp. subtilis str. 168

69.301

85.677

0.594
  recA Neisseria gonorrhoeae strain FA1090

60.571

91.146

0.552
  recA Neisseria gonorrhoeae MS11

60.571

91.146

0.552
  recA Neisseria gonorrhoeae MS11

60.571

91.146

0.552
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.357

88.281

0.542
  recA Glaesserella parasuis strain SC1401

60.588

88.542

0.536
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

84.115

0.526
  recA Acinetobacter baylyi ADP1

59.412

88.542

0.526
  recA Acinetobacter baumannii D1279779

61.35

84.896

0.521
  recA Vibrio cholerae strain A1552

61.231

84.635

0.518
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.231

84.635

0.518
  recA Pseudomonas stutzeri DSM 10701

57.061

90.365

0.516
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.215

86.198

0.51
  recA Helicobacter pylori 26695

57.784

86.979

0.503
  recA Helicobacter pylori strain NCTC11637

57.784

86.979

0.503
  recA Ralstonia pseudosolanacearum GMI1000

59.306

82.552

0.49