Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I6G82_RS13020 Genome accession   NZ_CP065643
Coordinates   2559538..2560599 (-) Length   353 a.a.
NCBI ID   WP_053993992.1    Uniprot ID   A0A0M9DLB9
Organism   Lysinibacillus macroides strain FDAARGOS_925     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2554538..2565599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G82_RS13005 (I6G82_12940) - 2555840..2556106 (-) 267 WP_004224903.1 stage V sporulation protein S -
  I6G82_RS13010 (I6G82_12945) - 2556274..2557071 (-) 798 WP_053993994.1 TIGR00282 family metallophosphoesterase -
  I6G82_RS13015 (I6G82_12950) rny 2557277..2558836 (-) 1560 WP_053993993.1 ribonuclease Y -
  I6G82_RS13020 (I6G82_12955) recA 2559538..2560599 (-) 1062 WP_053993992.1 recombinase RecA Machinery gene
  I6G82_RS13025 (I6G82_12960) cinA 2560761..2562020 (-) 1260 WP_053993991.1 competence/damage-inducible protein A Machinery gene
  I6G82_RS13030 (I6G82_12965) pgsA 2562038..2562616 (-) 579 WP_053993990.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I6G82_RS13035 (I6G82_12970) - 2562664..2563584 (-) 921 WP_200908516.1 helix-turn-helix domain-containing protein -
  I6G82_RS13040 (I6G82_12975) - 2563601..2564386 (-) 786 WP_053993989.1 DUF3388 domain-containing protein -
  I6G82_RS13045 (I6G82_12980) - 2564603..2564860 (-) 258 WP_053993988.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38006.16 Da        Isoelectric Point: 4.6873

>NTDB_id=512479 I6G82_RS13020 WP_053993992.1 2559538..2560599(-) (recA) [Lysinibacillus macroides strain FDAARGOS_925]
MSDRKAALEQALKQIEKNFGKGSIMKLGEKTDLEIATSSSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQATGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQVREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIMGNRT
KVKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGRENAKQYLKENPAVMEEIANK
IRSSYGIAAASYTIAAHEEEEMDEELLSLLEEE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=512479 I6G82_RS13020 WP_053993992.1 2559538..2560599(-) (recA) [Lysinibacillus macroides strain FDAARGOS_925]
ATGAGTGATCGTAAAGCAGCCTTAGAACAGGCACTAAAACAAATTGAAAAGAATTTTGGTAAAGGTTCCATCATGAAGCT
TGGGGAAAAAACCGACTTAGAAATTGCGACATCTTCAAGTGGATCGTTAGCGCTTGATGCAGCATTAGGTGTAGGTGGTT
ATCCGCGTGGACGAATTATTGAAGTATATGGACCTGAATCATCAGGTAAAACAACTGTTGCACTACACGCTATTGCTGAA
GTGCAAGCGACAGGTGGACAAGCAGCATTTATCGATGCTGAGCATGCGCTGGACCCAATCTATGCCCAGAAATTAGGGGT
TAATATTGATGAGTTACTATTATCACAGCCAGATACAGGGGAACAGGCACTTGAAATCGCAGAAGCTTTAGTACGCAGTG
GAGCGATTGATATTATTGTTATTGACTCTGTTGCAGCCTTAGTGCCAAAAGCAGAAATTGAAGGGGATATGGGGGATTCT
CATGTCGGCTTACAAGCTCGTCTAATGTCACAAGCTTTACGTAAACTGTCAGGAGCGATTAATAAATCCAAAACAATTGC
TATTTTTATTAACCAAGTTCGTGAAAAAATTGGTGTCATGTTTGGCAATCCAGAGACAACACCAGGTGGACGTGCGCTTA
AATTCTATAGCTCTGTGCGTTTAGAGGTACGTCGTGCAGAGGCAATTAAGCAAGGTAATGATATTATGGGTAACCGTACA
AAGGTAAAAATTGTGAAAAATAAAGTAGCGCCACCTTTCCGTACAGCAGAGGTAGATATTATGTATGGAGAAGGGATTTC
TAAAGAGGGCGAAACAGTCGATTTAGGTGTAGAATTAGATATTGTGCAAAAAAGTGGTTCTTGGTACGCATATGGGGATG
AGCGTTTAGGTCAAGGACGAGAAAATGCGAAACAATATTTAAAAGAAAATCCTGCAGTAATGGAGGAAATCGCTAACAAA
ATTCGTTCTTCCTATGGTATTGCTGCTGCTTCTTATACAATTGCTGCACATGAAGAGGAAGAAATGGACGAAGAATTACT
GTCTCTTCTCGAAGAAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M9DLB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.544

92.635

0.802
  recA Latilactobacillus sakei subsp. sakei 23K

75.153

92.351

0.694
  recA Streptococcus pyogenes NZ131

64.589

100

0.646
  recA Streptococcus mutans UA159

64.47

98.867

0.637
  recA Streptococcus pneumoniae D39

67.879

93.484

0.635
  recA Streptococcus pneumoniae R6

67.879

93.484

0.635
  recA Streptococcus pneumoniae TIGR4

67.879

93.484

0.635
  recA Streptococcus pneumoniae Rx1

67.879

93.484

0.635
  recA Streptococcus mitis SK321

67.879

93.484

0.635
  recA Streptococcus mitis NCTC 12261

67.576

93.484

0.632
  recA Lactococcus lactis subsp. cremoris KW2

66.364

93.484

0.62
  recA Neisseria gonorrhoeae strain FA1090

65.653

93.201

0.612
  recA Neisseria gonorrhoeae MS11

65.653

93.201

0.612
  recA Neisseria gonorrhoeae MS11

65.653

93.201

0.612
  recA Acinetobacter baylyi ADP1

61.782

98.584

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.099

97.167

0.603
  recA Ralstonia pseudosolanacearum GMI1000

64.22

92.635

0.595
  recA Helicobacter pylori strain NCTC11637

64.615

92.068

0.595
  recA Helicobacter pylori 26695

64.308

92.068

0.592
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.11

92.351

0.592
  recA Glaesserella parasuis strain SC1401

59.429

99.15

0.589
  recA Acinetobacter baumannii D1279779

60.704

96.601

0.586
  recA Pseudomonas stutzeri DSM 10701

59.593

97.45

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

91.501

0.572
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.125

90.652

0.572
  recA Vibrio cholerae strain A1552

63.125

90.652

0.572