Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   I6G82_RS13025 Genome accession   NZ_CP065643
Coordinates   2560761..2562020 (-) Length   419 a.a.
NCBI ID   WP_053993991.1    Uniprot ID   A0A0M9DKI2
Organism   Lysinibacillus macroides strain FDAARGOS_925     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2555761..2567020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G82_RS13005 (I6G82_12940) - 2555840..2556106 (-) 267 WP_004224903.1 stage V sporulation protein S -
  I6G82_RS13010 (I6G82_12945) - 2556274..2557071 (-) 798 WP_053993994.1 TIGR00282 family metallophosphoesterase -
  I6G82_RS13015 (I6G82_12950) rny 2557277..2558836 (-) 1560 WP_053993993.1 ribonuclease Y -
  I6G82_RS13020 (I6G82_12955) recA 2559538..2560599 (-) 1062 WP_053993992.1 recombinase RecA Machinery gene
  I6G82_RS13025 (I6G82_12960) cinA 2560761..2562020 (-) 1260 WP_053993991.1 competence/damage-inducible protein A Machinery gene
  I6G82_RS13030 (I6G82_12965) pgsA 2562038..2562616 (-) 579 WP_053993990.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I6G82_RS13035 (I6G82_12970) - 2562664..2563584 (-) 921 WP_200908516.1 helix-turn-helix domain-containing protein -
  I6G82_RS13040 (I6G82_12975) - 2563601..2564386 (-) 786 WP_053993989.1 DUF3388 domain-containing protein -
  I6G82_RS13045 (I6G82_12980) - 2564603..2564860 (-) 258 WP_053993988.1 DUF3243 domain-containing protein -
  I6G82_RS13050 (I6G82_12985) ymfI 2564905..2565633 (-) 729 WP_053993987.1 elongation factor P 5-aminopentanone reductase -
  I6G82_RS13055 (I6G82_12990) yfmH 2565630..2566931 (-) 1302 WP_053993986.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45275.81 Da        Isoelectric Point: 5.7666

>NTDB_id=512480 I6G82_RS13025 WP_053993991.1 2560761..2562020(-) (cinA) [Lysinibacillus macroides strain FDAARGOS_925]
MNAEILAVGSELLLGQITNTNAKFISSQLSELGINVFYHTVVGDNAKRLEQAIEVAESRADLIIFSGGLGPTKDDLTKET
IARHVGVQLKMDEVALTYIEQFFAKRGRSMTDNNRKQALVLAGSEVLANHHGMAPGMIFKKDQHTYILLPGPPKELEPMF
QFEAKPKLAAMLNDGGTIASHVMRFYGIGEAELEVRVQAILDAQTNPTVAPLASDGEVTLRVTAKAPTEQQAHQLIDAKV
AEIQALVGDYQYGVNDDSLASKTVEMLLDNELTIAAAESLTAGLFQSELAEIPGVGNALIGGVVTYTADAKVKQLGIAQK
LIDTHGVVSSECAAAMASAVREKFATNIGIGLTGEAGPTAHDHQPVGTVWIGIAINDEKPLTYLLHLSGMRNTNRLRAVK
FACHYLMQQLEERGYKKRY

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=512480 I6G82_RS13025 WP_053993991.1 2560761..2562020(-) (cinA) [Lysinibacillus macroides strain FDAARGOS_925]
ATGAATGCTGAAATTCTTGCAGTTGGCTCTGAACTATTATTAGGTCAAATTACGAATACAAATGCAAAATTTATCTCGAG
CCAGCTTTCTGAGCTAGGCATAAATGTTTTTTACCATACTGTAGTTGGCGATAATGCTAAACGTTTAGAGCAGGCTATTG
AAGTGGCTGAGTCTCGTGCAGATTTAATTATTTTTTCGGGTGGGCTTGGTCCTACAAAGGATGATTTAACAAAGGAGACA
ATCGCTCGTCATGTTGGTGTCCAGCTTAAAATGGATGAAGTTGCCTTAACGTATATTGAGCAATTTTTTGCTAAACGAGG
TCGTTCAATGACGGATAATAATCGTAAACAGGCATTGGTTTTAGCAGGCAGTGAAGTGTTAGCAAATCATCATGGCATGG
CGCCTGGCATGATTTTTAAAAAGGATCAACACACTTATATTTTACTGCCAGGGCCACCGAAAGAGCTAGAGCCAATGTTC
CAATTTGAGGCAAAGCCAAAGCTCGCTGCTATGCTTAATGATGGAGGAACGATTGCTTCTCATGTTATGCGCTTTTATGG
GATTGGTGAGGCTGAGCTTGAGGTACGCGTTCAAGCTATTTTAGATGCTCAAACAAATCCCACTGTTGCACCACTCGCGT
CAGATGGTGAGGTAACGTTGCGTGTCACAGCTAAAGCACCAACAGAACAGCAAGCACACCAGCTGATTGATGCCAAAGTT
GCAGAGATACAGGCACTTGTGGGTGACTATCAATATGGGGTCAATGATGATTCGCTGGCCTCCAAAACGGTTGAAATGCT
GCTGGATAATGAGCTAACAATTGCTGCTGCGGAAAGTTTAACAGCTGGGTTATTTCAATCTGAGCTTGCGGAAATTCCTG
GGGTAGGCAATGCGCTGATAGGAGGCGTTGTTACCTATACAGCTGATGCGAAAGTAAAACAGCTCGGCATTGCACAAAAA
CTAATTGATACACATGGTGTGGTAAGTAGCGAGTGTGCAGCGGCAATGGCAAGTGCTGTGCGTGAAAAATTTGCTACAAA
TATTGGGATTGGTCTTACAGGAGAAGCAGGTCCCACAGCACATGATCATCAGCCAGTAGGTACGGTTTGGATTGGTATTG
CCATTAATGATGAAAAGCCTCTTACATATTTACTGCACCTATCTGGTATGCGGAATACGAATCGACTGCGCGCAGTGAAA
TTTGCGTGTCATTATTTAATGCAACAGTTAGAAGAACGTGGTTATAAAAAGCGTTATTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M9DKI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.852

98.091

0.499
  cinA Streptococcus mitis SK321

45.17

91.408

0.413
  cinA Streptococcus mutans UA159

41.687

99.045

0.413
  cinA Streptococcus pneumoniae TIGR4

44.909

91.408

0.411
  cinA Streptococcus pneumoniae Rx1

44.909

91.408

0.411
  cinA Streptococcus pneumoniae R6

44.909

91.408

0.411
  cinA Streptococcus mitis NCTC 12261

44.648

91.408

0.408
  cinA Streptococcus pneumoniae D39

44.648

91.408

0.408