Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JNUCC51_RS05895 Genome accession   NZ_CP065545
Coordinates   1143537..1144601 (-) Length   354 a.a.
NCBI ID   WP_337991241.1    Uniprot ID   -
Organism   Lysinibacillus sp. JNUCC-51     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1138537..1149601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC51_RS05880 (JNUCC51_05805) - 1139266..1139946 (-) 681 WP_337991239.1 Wzz/FepE/Etk N-terminal domain-containing protein -
  JNUCC51_RS05885 (JNUCC51_05810) - 1140409..1141167 (-) 759 WP_337991240.1 CpsB/CapC family capsule biosynthesis tyrosine phosphatase -
  JNUCC51_RS05890 (JNUCC51_05815) rny 1141305..1142864 (-) 1560 WP_100543877.1 ribonuclease Y -
  JNUCC51_RS05895 (JNUCC51_05820) recA 1143537..1144601 (-) 1065 WP_337991241.1 recombinase RecA Machinery gene
  JNUCC51_RS05900 (JNUCC51_05825) - 1144626..1144949 (-) 324 WP_337991242.1 hypothetical protein -
  JNUCC51_RS05905 (JNUCC51_05830) cinA 1145166..1146422 (-) 1257 WP_337991243.1 competence/damage-inducible protein A Machinery gene
  JNUCC51_RS05910 (JNUCC51_05835) pgsA 1146440..1147018 (-) 579 WP_134018854.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JNUCC51_RS05915 (JNUCC51_05840) - 1147069..1147968 (-) 900 WP_337991244.1 RodZ domain-containing protein -
  JNUCC51_RS05920 (JNUCC51_05845) - 1147994..1148782 (-) 789 WP_337991245.1 DUF3388 domain-containing protein -
  JNUCC51_RS05925 (JNUCC51_05850) - 1149011..1149268 (-) 258 WP_100543881.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38146.29 Da        Isoelectric Point: 4.6884

>NTDB_id=511826 JNUCC51_RS05895 WP_337991241.1 1143537..1144601(-) (recA) [Lysinibacillus sp. JNUCC-51]
MSDRKAALEQALKQIEKNFGKGSIMKLGEKTDLEIATSSSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQAKGGQAAFIDAEHALDPIYAQKLGVDIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQVREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIMGNRT
KIKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGRENAKQYLKENPAVLDDIANK
IRASYGIASSSYTIAAHDDEEEMDEELKLLLEDE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=511826 JNUCC51_RS05895 WP_337991241.1 1143537..1144601(-) (recA) [Lysinibacillus sp. JNUCC-51]
ATGAGTGATCGTAAAGCTGCCTTAGAACAGGCGTTAAAACAAATTGAAAAGAATTTTGGTAAAGGTTCAATCATGAAACT
TGGCGAAAAGACTGATTTAGAAATCGCTACATCATCAAGTGGTTCGCTAGCACTTGATGCTGCATTAGGTGTTGGTGGTT
ATCCACGTGGACGAATTATTGAAGTATACGGCCCTGAATCATCAGGTAAAACAACGGTTGCTCTTCATGCCATTGCAGAG
GTTCAGGCAAAGGGTGGACAAGCAGCGTTTATCGATGCTGAGCACGCGTTAGATCCAATCTATGCACAAAAATTAGGTGT
CGATATTGATGAACTTCTATTATCTCAACCAGATACAGGAGAACAAGCGCTTGAAATCGCAGAAGCATTAGTACGTAGTG
GTGCTATCGATATCATCGTTATTGACTCAGTAGCAGCATTGGTTCCGAAAGCGGAAATCGAAGGAGATATGGGTGATTCG
CATGTTGGTTTACAAGCACGTTTAATGTCTCAGGCGTTACGTAAGCTTTCAGGTGCTATCAATAAATCAAAAACGATTGC
CATTTTCATTAACCAAGTACGTGAAAAAATCGGTGTTATGTTCGGAAACCCGGAAACAACACCTGGTGGTCGTGCACTTA
AATTCTATAGCTCTGTTCGTTTAGAAGTACGTCGTGCAGAAGCTATTAAACAAGGCAATGACATTATGGGTAACCGTACA
AAAATTAAAATTGTGAAAAACAAAGTAGCACCACCATTCCGTACAGCTGAAGTTGATATTATGTACGGTGAAGGAATTTC
AAAAGAGGGCGAAACAGTCGATTTAGGTGTTGAACTAGATATCGTTCAAAAAAGCGGTTCTTGGTATGCTTACGGTGATG
AGCGCCTAGGTCAAGGTCGTGAAAATGCTAAACAGTATTTAAAAGAAAATCCAGCAGTACTTGACGACATCGCAAATAAA
ATCCGTGCTTCTTACGGTATTGCATCATCATCTTACACAATTGCTGCGCATGATGATGAGGAAGAAATGGATGAGGAATT
AAAACTTCTTCTTGAAGATGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.239

92.373

0.797
  recA Latilactobacillus sakei subsp. sakei 23K

71.51

99.153

0.709
  recA Streptococcus pneumoniae TIGR4

64.11

100

0.661
  recA Streptococcus pneumoniae Rx1

64.11

100

0.661
  recA Streptococcus pneumoniae D39

64.11

100

0.661
  recA Streptococcus pneumoniae R6

64.11

100

0.661
  recA Streptococcus mitis SK321

63.989

100

0.653
  recA Streptococcus mitis NCTC 12261

63.989

100

0.653
  recA Streptococcus mutans UA159

63.611

100

0.647
  recA Streptococcus pyogenes NZ131

63.944

100

0.641
  recA Lactococcus lactis subsp. cremoris KW2

66.168

94.35

0.624
  recA Neisseria gonorrhoeae strain FA1090

65.653

92.938

0.61
  recA Neisseria gonorrhoeae MS11

65.653

92.938

0.61
  recA Neisseria gonorrhoeae MS11

65.653

92.938

0.61
  recA Acinetobacter baylyi ADP1

62.099

96.893

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.877

96.328

0.596
  recA Helicobacter pylori strain NCTC11637

64.923

91.808

0.596
  recA Acinetobacter baumannii D1279779

60

98.87

0.593
  recA Helicobacter pylori 26695

64.615

91.808

0.593
  recA Glaesserella parasuis strain SC1401

60.756

97.175

0.59
  recA Ralstonia pseudosolanacearum GMI1000

63.11

92.655

0.585
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.883

92.09

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

91.243

0.571
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.125

90.395

0.571
  recA Vibrio cholerae strain A1552

63.125

90.395

0.571
  recA Pseudomonas stutzeri DSM 10701

61.094

92.938

0.568