Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   JNUCC51_RS05905 Genome accession   NZ_CP065545
Coordinates   1145166..1146422 (-) Length   418 a.a.
NCBI ID   WP_337991243.1    Uniprot ID   -
Organism   Lysinibacillus sp. JNUCC-51     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1140166..1151422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC51_RS05885 (JNUCC51_05810) - 1140409..1141167 (-) 759 WP_337991240.1 CpsB/CapC family capsule biosynthesis tyrosine phosphatase -
  JNUCC51_RS05890 (JNUCC51_05815) rny 1141305..1142864 (-) 1560 WP_100543877.1 ribonuclease Y -
  JNUCC51_RS05895 (JNUCC51_05820) recA 1143537..1144601 (-) 1065 WP_337991241.1 recombinase RecA Machinery gene
  JNUCC51_RS05900 (JNUCC51_05825) - 1144626..1144949 (-) 324 WP_337991242.1 hypothetical protein -
  JNUCC51_RS05905 (JNUCC51_05830) cinA 1145166..1146422 (-) 1257 WP_337991243.1 competence/damage-inducible protein A Machinery gene
  JNUCC51_RS05910 (JNUCC51_05835) pgsA 1146440..1147018 (-) 579 WP_134018854.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JNUCC51_RS05915 (JNUCC51_05840) - 1147069..1147968 (-) 900 WP_337991244.1 RodZ domain-containing protein -
  JNUCC51_RS05920 (JNUCC51_05845) - 1147994..1148782 (-) 789 WP_337991245.1 DUF3388 domain-containing protein -
  JNUCC51_RS05925 (JNUCC51_05850) - 1149011..1149268 (-) 258 WP_100543881.1 DUF3243 domain-containing protein -
  JNUCC51_RS05930 (JNUCC51_05855) - 1149313..1150041 (-) 729 WP_337991246.1 SDR family oxidoreductase -
  JNUCC51_RS05935 (JNUCC51_05860) - 1150038..1151339 (-) 1302 WP_337991247.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45076.53 Da        Isoelectric Point: 4.9878

>NTDB_id=511827 JNUCC51_RS05905 WP_337991243.1 1145166..1146422(-) (cinA) [Lysinibacillus sp. JNUCC-51]
MNAEILAVGSELLLGQISNTNARFISSQLSELGINVYYHTVVGDNAHRLEEAISIAETRADLIIFSGGLGPTKDDLTKET
IARHLDVSLEFDDIALANIEQFFAKRGRPMTENNRKQALILAGSEVLVNHHGMAPGMILTKDGRTYILLPGPPKELEPMF
QFEAKPKLGAMLNAGGVITSHVMRFYGIGEAELEVRVQNILDSQTNPTVAPLASDGEVTLRVTAKAETEQEAQQLIASKV
AEIQAIVGDYQYGIDDDSLASKTVEMLLDNKLTISAAESLTAGLFQSELAEIPGVGDALVGGVVTYTEEAKIKQLGISKE
LLTTHGIVSSECAAAMASAVREKFDTDIGIGLTGAAGPTAHDHQPVGTVWIGLAIGDEKPITYLLHLSGMRNTNRLRAAK
FTCHYLMQLLVERGFKKR

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=511827 JNUCC51_RS05905 WP_337991243.1 1145166..1146422(-) (cinA) [Lysinibacillus sp. JNUCC-51]
ATGAATGCTGAAATTCTTGCGGTTGGCTCAGAGTTATTGCTTGGTCAGATTTCGAACACAAATGCGAGATTTATTTCTAG
TCAGTTGTCCGAGTTAGGGATAAATGTGTATTATCACACTGTTGTTGGAGATAATGCACACCGTTTAGAAGAGGCCATTT
CCATTGCAGAGACTCGTGCTGATTTAATCATTTTCTCTGGTGGGCTTGGTCCTACAAAAGATGATTTAACAAAGGAAACG
ATAGCGCGTCATCTTGATGTTTCTCTCGAATTTGATGATATCGCACTAGCTAATATTGAGCAGTTTTTTGCAAAACGAGG
ACGCCCAATGACGGAAAATAATCGTAAGCAGGCTTTAATACTAGCGGGTAGTGAGGTGCTTGTAAACCATCACGGTATGG
CACCTGGCATGATATTAACAAAGGATGGGCGTACGTATATTTTGCTTCCGGGGCCACCTAAAGAGCTTGAGCCAATGTTC
CAGTTTGAAGCAAAGCCAAAGCTTGGTGCGATGTTAAATGCTGGAGGGGTAATTACATCGCACGTTATGCGTTTTTATGG
AATTGGAGAGGCGGAGCTAGAGGTACGTGTCCAAAATATTTTAGATTCGCAAACAAACCCAACTGTTGCTCCACTTGCTT
CTGACGGTGAGGTTACATTGCGTGTAACTGCCAAAGCAGAAACGGAGCAAGAAGCGCAGCAGCTTATTGCCTCGAAGGTA
GCGGAGATTCAAGCGATTGTTGGGGACTATCAATACGGTATAGATGATGATTCTCTTGCCTCTAAAACAGTAGAAATGTT
ACTAGACAATAAGTTAACAATTTCTGCAGCAGAAAGTTTAACAGCGGGATTATTTCAGTCAGAGCTTGCTGAAATACCAG
GTGTTGGGGATGCCCTTGTTGGTGGCGTTGTTACGTATACGGAAGAGGCTAAGATTAAGCAACTCGGTATTTCTAAGGAA
TTATTAACTACACATGGTATTGTAAGCAGTGAATGTGCAGCGGCTATGGCTAGCGCTGTTCGTGAAAAGTTTGATACAGA
TATTGGTATTGGATTAACAGGTGCAGCAGGTCCTACAGCCCATGATCATCAACCAGTGGGGACGGTTTGGATTGGTCTTG
CCATTGGCGATGAAAAACCGATAACGTATTTACTTCATTTATCGGGTATGCGTAATACAAATCGACTGCGTGCAGCGAAA
TTTACTTGTCATTATTTAATGCAGCTTTTAGTAGAAAGAGGCTTTAAAAAACGTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.214

98.565

0.505
  cinA Streptococcus mitis SK321

46.736

91.627

0.428
  cinA Streptococcus pneumoniae Rx1

46.475

91.627

0.426
  cinA Streptococcus pneumoniae TIGR4

46.475

91.627

0.426
  cinA Streptococcus pneumoniae R6

46.475

91.627

0.426
  cinA Streptococcus pneumoniae D39

46.214

91.627

0.423
  cinA Streptococcus mitis NCTC 12261

45.953

91.627

0.421
  cinA Streptococcus mutans UA159

46.296

90.431

0.419