Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SPAF_RS09965 Genome accession   NC_017905
Coordinates   2090257..2091402 (-) Length   381 a.a.
NCBI ID   WP_003014536.1    Uniprot ID   I2NSJ6
Organism   Streptococcus parasanguinis FW213     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2085257..2096402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPAF_RS09930 (Spaf_2024) - 2085976..2086386 (-) 411 WP_013904313.1 SP_0198 family lipoprotein -
  SPAF_RS09935 (Spaf_2025) - 2086463..2087695 (-) 1233 WP_014714056.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  SPAF_RS09940 (Spaf_2026) - 2087903..2088208 (-) 306 WP_003001941.1 DUF1292 domain-containing protein -
  SPAF_RS09945 (Spaf_2027) ruvX 2088231..2088650 (-) 420 WP_003014525.1 Holliday junction resolvase RuvX -
  SPAF_RS09950 (Spaf_2028) - 2088650..2088916 (-) 267 WP_003002070.1 IreB family regulatory phosphoprotein -
  SPAF_RS09955 (Spaf_2029) - 2089040..2089636 (-) 597 WP_003014531.1 SP0191 family lipoprotein -
  SPAF_RS09960 (Spaf_2030) spx 2089771..2090169 (-) 399 WP_003009108.1 transcriptional regulator Spx -
  SPAF_RS09965 (Spaf_2031) recA 2090257..2091402 (-) 1146 WP_003014536.1 recombinase RecA Machinery gene
  SPAF_RS09970 (Spaf_2032) cinA 2091522..2092790 (-) 1269 WP_041826499.1 competence/damage-inducible protein A Machinery gene
  SPAF_RS09975 (Spaf_2033) - 2092888..2093442 (-) 555 WP_014714058.1 DNA-3-methyladenine glycosylase I -
  SPAF_RS09980 (Spaf_2034) ruvA 2093452..2094045 (-) 594 WP_014714059.1 Holliday junction branch migration protein RuvA -
  SPAF_RS09985 (Spaf_2035) mutL 2094066..2096009 (-) 1944 WP_041826500.1 DNA mismatch repair endonuclease MutL -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 41043.76 Da        Isoelectric Point: 4.8456

>NTDB_id=51150 SPAF_RS09965 WP_003014536.1 2090257..2091402(-) (recA) [Streptococcus parasanguinis FW213]
MAKKQKKLDDITKKFGDEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAMVEIMYGEGISRTGELVKIATDLDIIQKAGAWYSYNGEKIGQGSE
NAKKFLADHPEIFDEIDHKVRVHFGLIEEDEAVKSLDKTEEAAPVVEEVTLDLDDAIEIED

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=51150 SPAF_RS09965 WP_003014536.1 2090257..2091402(-) (recA) [Streptococcus parasanguinis FW213]
ATGGCGAAAAAACAGAAAAAATTAGATGATATCACTAAGAAATTTGGAGATGAGCGTGAAAAAGCGCTCAACGATGCCCT
GAAGTTGATCGAAAAAGACTTTGGTAAAGGATCCATCATGCGTTTGGGTGAACGTGCAGAGCAAAAAGTACAAGTCATGA
GCTCTGGTTCCTTGGCGCTTGATATTGCCTTGGGTGCTGGTGGTTATCCGAAAGGTCGGATCATCGAAATCTATGGTCCA
GAATCATCTGGTAAAACAACCGTTGCCCTCCATGCAGTAGCCCAAGCACAGAAAGAAGGAGGCATTGCAGCCTTTATCGA
TGCGGAGCATGCCTTGGATCCATCTTATGCAGCGGCTCTTGGAGTCAATATCGACGAACTTCTCTTGTCTCAACCAGACT
CAGGGGAGCAAGGACTTGAAATTGCTGGTAAATTGATCGACTCAGGTGCGGTTGATTTGGTGGTTGTCGATTCTGTTGCT
GCCTTGGTACCACGTGCGGAAATCGATGGAGATATCGGAGATAGCCACGTTGGTTTGCAAGCGCGGATGATGAGCCAAGC
GATGCGCAAACTCGGAGCTTCCATCAACAAGACCAAGACCATTGCCATCTTTATTAACCAATTGCGTGAAAAAGTTGGGG
TTATGTTTGGGAATCCTGAAACCACACCTGGTGGTCGTGCCCTTAAATTCTATGCTTCGGTTCGTTTAGATGTCCGTGGA
AATACTCAAATCAAGGGGACTGGGGACCAAAAAGATACCAACGTTGGTAAGGAAACTAAGATCAAGGTTGTAAAGAACAA
GGTAGCTCCACCGTTTAAAGAAGCCATGGTTGAAATCATGTACGGGGAAGGAATTTCACGTACGGGTGAATTGGTTAAAA
TTGCAACAGATTTGGATATCATTCAAAAAGCGGGTGCGTGGTACTCATATAATGGCGAAAAAATTGGTCAAGGATCTGAA
AATGCTAAGAAATTCTTGGCTGACCACCCAGAAATTTTTGACGAAATCGACCACAAGGTTCGGGTACATTTTGGTTTGAT
CGAAGAAGACGAAGCGGTGAAAAGCCTTGATAAAACTGAAGAGGCAGCTCCTGTCGTAGAAGAAGTAACTCTGGATTTAG
ATGACGCGATTGAAATTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2NSJ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

90.601

100

0.911
  recA Streptococcus mitis SK321

90.026

100

0.9
  recA Streptococcus pneumoniae Rx1

88.63

100

0.9
  recA Streptococcus pneumoniae D39

88.63

100

0.9
  recA Streptococcus pneumoniae R6

88.63

100

0.9
  recA Streptococcus pneumoniae TIGR4

88.63

100

0.9
  recA Streptococcus mutans UA159

87.206

100

0.877
  recA Streptococcus pyogenes NZ131

87.402

100

0.874
  recA Lactococcus lactis subsp. cremoris KW2

78.571

91.864

0.722
  recA Latilactobacillus sakei subsp. sakei 23K

67.697

93.438

0.633
  recA Bacillus subtilis subsp. subtilis str. 168

69.301

86.352

0.598
  recA Glaesserella parasuis strain SC1401

60.882

89.239

0.543
  recA Acinetobacter baylyi ADP1

58.974

92.126

0.543
  recA Acinetobacter baumannii D1279779

59.884

90.289

0.541
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.777

84.777

0.541
  recA Neisseria gonorrhoeae MS11

61.934

86.877

0.538
  recA Neisseria gonorrhoeae MS11

61.934

86.877

0.538
  recA Neisseria gonorrhoeae strain FA1090

61.934

86.877

0.538
  recA Vibrio cholerae strain A1552

62.769

85.302

0.535
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.769

85.302

0.535
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.702

86.352

0.533
  recA Ralstonia pseudosolanacearum GMI1000

61.199

83.202

0.509
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.61

86.877

0.509
  recA Helicobacter pylori strain NCTC11637

57.186

87.664

0.501
  recA Helicobacter pylori 26695

57.186

87.664

0.501
  recA Pseudomonas stutzeri DSM 10701

57.927

86.089

0.499

Multiple sequence alignment