Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I5776_RS12340 Genome accession   NZ_CP065425
Coordinates   2468636..2469670 (-) Length   344 a.a.
NCBI ID   WP_202776707.1    Uniprot ID   -
Organism   Heyndrickxia vini strain JCM 19841     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2463636..2474670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5776_RS12325 (I5776_12320) spoVS 2465347..2465607 (-) 261 WP_058002725.1 stage V sporulation protein SpoVS -
  I5776_RS12330 (I5776_12325) - 2465756..2466556 (-) 801 WP_202776705.1 TIGR00282 family metallophosphoesterase -
  I5776_RS12335 (I5776_12330) rny 2466793..2468352 (-) 1560 WP_202776706.1 ribonuclease Y -
  I5776_RS12340 (I5776_12335) recA 2468636..2469670 (-) 1035 WP_202776707.1 recombinase RecA Machinery gene
  I5776_RS12345 (I5776_12340) cinA 2469920..2471158 (-) 1239 WP_202776708.1 competence/damage-inducible protein A Machinery gene
  I5776_RS12350 (I5776_12345) pgsA 2471190..2471771 (-) 582 WP_202776709.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I5776_RS12355 (I5776_12350) - 2471875..2472762 (-) 888 WP_202776710.1 RodZ domain-containing protein -
  I5776_RS12360 (I5776_12355) - 2472781..2473572 (-) 792 WP_202776711.1 DUF3388 domain-containing protein -
  I5776_RS12365 (I5776_12360) - 2473804..2474061 (-) 258 WP_202776712.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37531.79 Da        Isoelectric Point: 4.9217

>NTDB_id=509452 I5776_RS12340 WP_202776707.1 2468636..2469670(-) (recA) [Heyndrickxia vini strain JCM 19841]
MSDRQAALEMALKQIEKQFGKGSVMKLGEQTDRRISTVPSGSLALDVALGVGGYPRGRVIEIYGPESSGKTTVALHAIAE
VQAKGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIVGNKT
KVKVVKNKVAPPFRVAEVDIMYGEGISREGEIIDMASELDIVQKSGSWYSYNDERLGQGRENAKLFLKENPAVRDEVMYK
IRDHYGLDDEKVAPIEEEQEELDL

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=509452 I5776_RS12340 WP_202776707.1 2468636..2469670(-) (recA) [Heyndrickxia vini strain JCM 19841]
GTGAGTGATCGTCAAGCAGCCCTAGAAATGGCTTTGAAACAAATAGAAAAACAATTCGGTAAAGGTTCCGTTATGAAACT
AGGAGAACAAACAGATAGAAGAATTTCAACAGTTCCTAGTGGATCACTTGCACTTGATGTTGCATTAGGTGTAGGTGGGT
ACCCAAGGGGTCGAGTGATTGAGATTTACGGACCTGAAAGTTCAGGTAAAACAACAGTAGCCTTACATGCTATTGCTGAA
GTACAGGCAAAGGGTGGCCAAGCAGCATTTATCGACGCAGAACATGCACTTGATCCTGTGTATGCCCAAAAATTGGGTGT
AAATATTGATGAATTGCTTTTATCTCAACCTGATACTGGTGAGCAGGCCCTTGAAATTGCTGAAGCACTTGTACGAAGTG
GTGCAATTGATATTATCGTAATTGATTCCGTTGCTGCACTTGTACCAAAAGCTGAAATTGAAGGTGAAATGGGAGATTCT
CATGTTGGTTTACAAGCGCGTTTGATGTCGCAAGCATTGCGTAAACTTTCAGGTGCAATCAATAAATCAAAAACAATTGC
GATTTTCATTAACCAAATTAGGGAAAAAGTAGGCGTTATGTTTGGTAATCCCGAAACAACACCTGGAGGACGTGCATTGA
AGTTTTATTCTTCCGTACGTCTTGAAGTACGCCGTGCCGAACAATTAAAGCAAGGTAACGATATTGTAGGTAATAAAACA
AAAGTAAAAGTTGTGAAAAATAAGGTTGCACCGCCGTTCCGTGTGGCTGAAGTAGACATTATGTACGGTGAAGGGATTTC
TAGAGAAGGTGAAATCATTGATATGGCGTCCGAACTTGATATTGTTCAGAAGAGTGGATCATGGTATTCATATAACGATG
AGCGATTAGGTCAAGGGCGTGAAAATGCAAAGCTTTTCTTAAAAGAAAATCCTGCGGTTCGTGATGAAGTTATGTATAAA
ATTCGTGATCATTACGGTTTAGATGATGAAAAGGTAGCTCCAATCGAAGAAGAGCAAGAAGAACTAGATTTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.952

96.512

0.849
  recA Latilactobacillus sakei subsp. sakei 23K

74.412

98.837

0.735
  recA Streptococcus mitis SK321

64.888

100

0.672
  recA Streptococcus mutans UA159

66.379

100

0.672
  recA Streptococcus mitis NCTC 12261

67.656

97.965

0.663
  recA Lactococcus lactis subsp. cremoris KW2

67.359

97.965

0.66
  recA Streptococcus pneumoniae D39

68.072

96.512

0.657
  recA Streptococcus pneumoniae TIGR4

68.072

96.512

0.657
  recA Streptococcus pneumoniae R6

68.072

96.512

0.657
  recA Streptococcus pneumoniae Rx1

68.072

96.512

0.657
  recA Streptococcus pyogenes NZ131

68.902

95.349

0.657
  recA Ralstonia pseudosolanacearum GMI1000

66.361

95.058

0.631
  recA Neisseria gonorrhoeae strain FA1090

65.138

95.058

0.619
  recA Neisseria gonorrhoeae MS11

65.138

95.058

0.619
  recA Neisseria gonorrhoeae MS11

65.138

95.058

0.619
  recA Acinetobacter baumannii D1279779

61.696

99.419

0.613
  recA Acinetobacter baylyi ADP1

61.516

99.709

0.613
  recA Helicobacter pylori 26695

62.315

97.965

0.61
  recA Helicobacter pylori strain NCTC11637

62.315

97.965

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.765

98.837

0.61
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.29

99.128

0.608
  recA Vibrio cholerae strain A1552

61.29

99.128

0.608
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

95.058

0.605
  recA Pseudomonas stutzeri DSM 10701

59.593

100

0.596
  recA Glaesserella parasuis strain SC1401

64.062

93.023

0.596
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.154

94.477

0.587