Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   I5776_RS12345 Genome accession   NZ_CP065425
Coordinates   2469920..2471158 (-) Length   412 a.a.
NCBI ID   WP_202776708.1    Uniprot ID   -
Organism   Heyndrickxia vini strain JCM 19841     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2464920..2476158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5776_RS12325 (I5776_12320) spoVS 2465347..2465607 (-) 261 WP_058002725.1 stage V sporulation protein SpoVS -
  I5776_RS12330 (I5776_12325) - 2465756..2466556 (-) 801 WP_202776705.1 TIGR00282 family metallophosphoesterase -
  I5776_RS12335 (I5776_12330) rny 2466793..2468352 (-) 1560 WP_202776706.1 ribonuclease Y -
  I5776_RS12340 (I5776_12335) recA 2468636..2469670 (-) 1035 WP_202776707.1 recombinase RecA Machinery gene
  I5776_RS12345 (I5776_12340) cinA 2469920..2471158 (-) 1239 WP_202776708.1 competence/damage-inducible protein A Machinery gene
  I5776_RS12350 (I5776_12345) pgsA 2471190..2471771 (-) 582 WP_202776709.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I5776_RS12355 (I5776_12350) - 2471875..2472762 (-) 888 WP_202776710.1 RodZ domain-containing protein -
  I5776_RS12360 (I5776_12355) - 2472781..2473572 (-) 792 WP_202776711.1 DUF3388 domain-containing protein -
  I5776_RS12365 (I5776_12360) - 2473804..2474061 (-) 258 WP_202776712.1 DUF3243 domain-containing protein -
  I5776_RS12370 (I5776_12365) - 2474131..2474853 (-) 723 WP_202776713.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45452.06 Da        Isoelectric Point: 5.0910

>NTDB_id=509453 I5776_RS12345 WP_202776708.1 2469920..2471158(-) (cinA) [Heyndrickxia vini strain JCM 19841]
MKAEIIAVGSELLLGQIVNTNAKYISERLAEIGVNVYYQTVVGDNPVRLEQSIEIAENRADLIIFTGGLGPTKDDLTKET
IAAHIGKKLVTDHDAMVSIEQYFQRTKRVMTENNKKQALVLEGAIVLPNENGMAPGMFLKNGLHFYMLLPGPPHEMEPMF
INYGRNAILETLDEHQKIESRVLRFFGIGEAQLETEIVDILDRQTNPTIAPLASEGEVTLRITAKHQSSSEAWKLIQQAE
EEILLRVGDYFYGYDDTSLMQELITLLNKNNQTIACAESLTAGLFQSNMGNFSGVSSILKGGVVCYTNEAKMKLVNVKKE
TLSHYGAVSKECAAELAENIMSELDSTIGISFTGVAGPDPLEGKPAGTVWIGIAQKNKATKTFLLELASSRNSNRIRTMK
YGCHYLINELTT

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=509453 I5776_RS12345 WP_202776708.1 2469920..2471158(-) (cinA) [Heyndrickxia vini strain JCM 19841]
TTGAAGGCTGAAATTATCGCAGTAGGATCAGAGCTCTTACTCGGACAAATAGTTAATACAAATGCAAAATATATCTCAGA
GCGTTTAGCTGAAATTGGAGTAAATGTATATTACCAAACAGTTGTTGGCGATAACCCTGTTCGATTAGAGCAAAGTATAG
AAATAGCTGAAAATCGTGCGGATTTAATTATATTTACAGGTGGACTTGGACCTACTAAGGACGATTTAACGAAAGAAACG
ATTGCAGCCCATATCGGAAAGAAACTCGTAACTGATCACGACGCAATGGTTTCAATTGAACAATATTTTCAAAGAACGAA
ACGTGTGATGACAGAGAATAATAAAAAACAAGCGCTTGTGTTGGAAGGTGCGATAGTTTTACCAAATGAGAATGGGATGG
CACCGGGGATGTTTTTAAAAAATGGATTGCATTTCTATATGCTCTTACCTGGACCGCCACATGAAATGGAACCTATGTTT
ATTAACTATGGCAGAAATGCAATTTTAGAGACCTTAGATGAACATCAAAAAATAGAATCCAGAGTTCTTCGTTTTTTTGG
AATTGGTGAAGCACAGTTGGAGACGGAAATTGTAGATATTTTGGATCGTCAAACAAACCCCACAATTGCTCCGTTAGCAT
CTGAAGGCGAAGTGACCTTGAGAATTACTGCCAAGCATCAATCAAGTAGTGAGGCGTGGAAGTTAATACAACAAGCGGAA
GAAGAAATTCTTCTTCGAGTAGGTGATTATTTCTATGGATATGATGATACATCATTAATGCAAGAATTAATTACGTTATT
AAATAAAAATAACCAAACCATCGCGTGTGCAGAAAGCTTGACTGCTGGCTTATTTCAATCAAATATGGGTAACTTTTCCG
GAGTTAGCTCTATATTAAAAGGCGGTGTCGTTTGTTATACAAATGAAGCAAAAATGAAACTAGTGAACGTCAAAAAAGAA
ACACTTTCACATTATGGGGCTGTAAGTAAAGAATGTGCTGCGGAATTAGCCGAAAATATTATGTCAGAACTAGATTCAAC
AATCGGGATAAGTTTTACTGGAGTCGCGGGACCGGATCCATTAGAGGGAAAACCTGCAGGAACTGTATGGATTGGAATTG
CACAAAAAAATAAAGCAACCAAAACTTTTCTTTTAGAATTAGCAAGTTCAAGAAATAGTAATCGTATACGAACAATGAAA
TATGGGTGTCATTATTTAATTAATGAACTTACAACATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-164)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.191

99.272

0.578
  cinA Streptococcus pneumoniae TIGR4

51.302

93.204

0.478
  cinA Streptococcus mitis SK321

51.036

93.689

0.478
  cinA Streptococcus mitis NCTC 12261

50.777

93.689

0.476
  cinA Streptococcus pneumoniae Rx1

50.781

93.204

0.473
  cinA Streptococcus pneumoniae R6

50.781

93.204

0.473
  cinA Streptococcus pneumoniae D39

50.521

93.204

0.471
  cinA Streptococcus mutans UA159

44.5

97.087

0.432
  cinA Streptococcus suis isolate S10

40.31

93.932

0.379