Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I3X05_RS13815 Genome accession   NZ_CP065217
Coordinates   2941658..2942704 (-) Length   348 a.a.
NCBI ID   WP_039430472.1    Uniprot ID   A0A0F2HTG3
Organism   Vibrio navarrensis strain 20-VB00237     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2936658..2947704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3X05_RS13795 (I3X05_14140) csrA 2936705..2936902 (-) 198 WP_039430468.1 carbon storage regulator CsrA -
  I3X05_RS13800 (I3X05_14145) - 2936994..2938181 (-) 1188 WP_045571221.1 aspartate kinase -
  I3X05_RS13805 (I3X05_14150) alaS 2938378..2940960 (-) 2583 WP_045571222.1 alanine--tRNA ligase -
  I3X05_RS13810 (I3X05_14155) recX 2941142..2941600 (-) 459 WP_045571223.1 recombination regulator RecX -
  I3X05_RS13815 (I3X05_14160) recA 2941658..2942704 (-) 1047 WP_039430472.1 recombinase RecA Machinery gene
  I3X05_RS13820 (I3X05_14165) pncC 2942882..2943373 (-) 492 WP_045571224.1 nicotinamide-nucleotide amidase -
  I3X05_RS13825 (I3X05_14170) mutS 2943455..2946016 (+) 2562 WP_045571225.1 DNA mismatch repair protein MutS -
  I3X05_RS13830 (I3X05_14175) rpoS 2946115..2947113 (-) 999 WP_045571226.1 RNA polymerase sigma factor RpoS Regulator

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37532.08 Da        Isoelectric Point: 4.9706

>NTDB_id=508206 I3X05_RS13815 WP_039430472.1 2941658..2942704(-) (recA) [Vibrio navarrensis strain 20-VB00237]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKCKLIEKSGAWYSYNGDKIGQGKANACKYLKEHVDVAKVLDT
KLREMLLSATPLEGAELADEAPEQEEEF

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=508206 I3X05_RS13815 WP_039430472.1 2941658..2942704(-) (recA) [Vibrio navarrensis strain 20-VB00237]
ATGGACGAGAATAAACAAAAAGCGCTCGCCGCTGCGCTAGGTCAGATCGAAAAGCAGTTTGGTAAAGGCTCTATCATGCG
CTTAGGCGACAACCGTGCGATGGATGTCGAAACGATTTCTACGGGCTCTCTTTCTCTGGACATTGCACTAGGCGCTGGCG
GCCTACCAATGGGCCGTATTGTCGAAATCTTTGGCCCAGAATCATCCGGTAAAACGACGTTAACACTTGAGCTGATTGCC
GCAGCGCAACGCGAAGGTAAAACCTGTGCTTTTATCGATGCTGAACACGCGCTCGACCCTGTTTATGCTAAAAAACTGGG
TGTTAACATTGATCAACTGCTGGTCTCTCAGCCTGACACGGGCGAGCAAGCGCTGGAAATCTGTGACGCTTTGGCACGCT
CTGGTGCGGTCGACGTGATTGTTGTCGACTCCGTTGCTGCCTTGACACCAAAAGCAGAGATCGAAGGTGAGATGGGCGAT
TCGCACATGGGGCTGCAGGCTCGTATGCTCTCTCAAGCGATGCGTAAACTCACGGGTAACCTTAAGCAATCTAACTGTAT
GTGTATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTTGGTAACCCAGAGACCACAACGGGTGGTAACGCGC
TAAAATTCTACGCTTCTGTTCGTTTAGATATCCGTCGTACGGGGTCTATCAAAGAAGGCGACGAAGTGGTGGGCAACGAA
ACGCGCATCAAAGTGGTGAAAAACAAGATCGCGGCACCATTTAAAGAAGCTAACACTCAGATCATGTATGGCCAAGGCTT
TAACCGCGAAGGTGAGCTGATTGATCTCGGTGTGAAATGTAAGTTGATCGAGAAATCAGGTGCTTGGTACAGCTACAACG
GTGATAAGATCGGCCAAGGTAAAGCAAATGCCTGTAAGTATCTGAAAGAACACGTTGATGTGGCGAAAGTATTGGATACC
AAACTGCGTGAAATGCTGCTCTCTGCCACCCCGCTAGAAGGCGCGGAACTGGCTGATGAAGCACCAGAGCAAGAAGAAGA
GTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F2HTG3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

96.037

94.253

0.905
  recA Vibrio cholerae O1 biovar El Tor strain E7946

96.037

94.253

0.905
  recA Pseudomonas stutzeri DSM 10701

72.464

99.138

0.718
  recA Acinetobacter baumannii D1279779

70.882

97.701

0.693
  recA Acinetobacter baylyi ADP1

72.256

94.253

0.681
  recA Glaesserella parasuis strain SC1401

72.086

93.678

0.675
  recA Ralstonia pseudosolanacearum GMI1000

69.207

94.253

0.652
  recA Neisseria gonorrhoeae MS11

68.712

93.678

0.644
  recA Neisseria gonorrhoeae MS11

68.712

93.678

0.644
  recA Neisseria gonorrhoeae strain FA1090

68.712

93.678

0.644
  recA Helicobacter pylori 26695

59.71

99.138

0.592
  recA Helicobacter pylori strain NCTC11637

59.42

99.138

0.589
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.924

90.805

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

92.241

0.58
  recA Streptococcus pneumoniae R6

62.229

92.816

0.578
  recA Streptococcus pneumoniae TIGR4

62.229

92.816

0.578
  recA Streptococcus pneumoniae Rx1

62.229

92.816

0.578
  recA Streptococcus pneumoniae D39

62.229

92.816

0.578
  recA Lactococcus lactis subsp. cremoris KW2

61.92

92.816

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

61.994

92.241

0.572
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.121

95.115

0.572
  recA Streptococcus mitis SK321

61.61

92.816

0.572
  recA Streptococcus pyogenes NZ131

60.923

93.391

0.569
  recA Streptococcus mitis NCTC 12261

61.3

92.816

0.569
  recA Streptococcus mutans UA159

60.308

93.391

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.451

94.253

0.56