Detailed information NTG0508208

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I3X05_RS13830
• Genome accession: NZ_CP065217
• Coordinates: 2946115..2947113 (-)
• Length: 332 a.a.
• NCBI ID: WP_045571226.1
• Uniprot ID: A0A0F2HWA1
• Organism: Vibrio navarrensis strain 20-VB00237
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2941115..2952113

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I3X05_RS13810 (I3X05_14155)	recX	2941142..2941600 (-)	459	WP_045571223.1	recombination regulator RecX	-
I3X05_RS13815 (I3X05_14160)	recA	2941658..2942704 (-)	1047	WP_039430472.1	recombinase RecA	Machinery gene
I3X05_RS13820 (I3X05_14165)	pncC	2942882..2943373 (-)	492	WP_045571224.1	nicotinamide-nucleotide amidase	-
I3X05_RS13825 (I3X05_14170)	mutS	2943455..2946016 (+)	2562	WP_045571225.1	DNA mismatch repair protein MutS	-
I3X05_RS13830 (I3X05_14175)	rpoS	2946115..2947113 (-)	999	WP_045571226.1	RNA polymerase sigma factor RpoS	Regulator
I3X05_RS13835 (I3X05_14180)	-	2947200..2948123 (-)	924	WP_045571227.1	peptidoglycan DD-metalloendopeptidase family protein	-
I3X05_RS13840 (I3X05_14185)	-	2948139..2948765 (-)	627	WP_045571228.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
I3X05_RS13845 (I3X05_14190)	surE	2948758..2949534 (-)	777	WP_045571277.1	5'/3'-nucleotidase SurE	-
I3X05_RS13850 (I3X05_14195)	truD	2949537..2950583 (-)	1047	WP_045571278.1	tRNA pseudouridine(13) synthase TruD	-
I3X05_RS13855 (I3X05_14200)	ispF	2950618..2951094 (-)	477	WP_045571229.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I3X05_RS13860 (I3X05_14205)	ispD	2951098..2951802 (-)	705	WP_045571230.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
I3X05_RS13865 (I3X05_14210)	ftsB	2951804..2952085 (-)	282	WP_039430478.1	cell division protein FtsB	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 38026.84 Da
• Isoelectric Point: 4.4064

>NTDB_id=508208 I3X05_RS13830 WP_045571226.1 2946115..2947113(-) (rpoS) [Vibrio navarrensis strain 20-VB00237]
MSNSNAVTKVDDFDIDQMDVELNDSDIEVSDKEDNSSDTNTALREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYAR
RALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQ
TRTIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIASQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDA
NNSDPEVSTQDEDMRNSLIFWLEELNPKQKEVLARRFGLLGYEPSTLEEVGKEIGLTRERVRQIQVEGLRRLREILVKQG
LNMENLFDVDMD

Nucleotide

• Length: 999 bp

>NTDB_id=508208 I3X05_RS13830 WP_045571226.1 2946115..2947113(-) (rpoS) [Vibrio navarrensis strain 20-VB00237]
ATGAGTAACAGCAATGCAGTAACCAAAGTTGATGATTTCGATATTGATCAAATGGATGTAGAGTTGAACGACTCTGATAT
CGAAGTTAGTGATAAAGAAGACAACAGTTCCGATACCAATACCGCACTCAGAGAAGAGTTTGATGCCAGCAACAAAAGCT
TGGATGCGACTCAGCTTTATCTCGGAGAGATCGGTTTCTCACCGCTACTGACCGCTGAAGAAGAAGTGCTTTACGCTCGA
CGTGCATTGCGTGGGGATGAAGCCGCACGTAAACGTATGATTGAAAGCAACTTACGTTTGGTTGTGAAGATTTCTCGCCG
CTACAGCAACCGTGGATTAGCGTTACTTGATCTGATTGAAGAGGGTAACCTTGGCCTGATCAGAGCGGTGGAAAAATTTG
ACCCAGAGCGCGGTTTCCGCTTCTCTACTTACGCTACTTGGTGGATTCGTCAAACCATCGAACGCGCACTGATGAATCAG
ACTCGGACCATCCGTTTACCTATCCATGTTGTCAAAGAGCTGAACATCTATCTGCGTACCGCACGCGAGTTGTCGCAAAA
ACTCGACCACGAACCTACGGCAGAAGAGATCGCTTCTCAGCTGGATATTCCGGTTGAAGATGTCAGCAAAATGCTGCGCC
TCAACGAGCGGATTAGCTCTGTCGATACACCGATTGGTGGTGACGGGGAAAAAGCGCTGCTGGATATTATTCCCGATGCG
AACAACTCCGATCCTGAAGTGTCAACTCAGGATGAAGATATGCGCAACTCACTGATTTTCTGGTTAGAAGAGCTAAATCC
TAAACAGAAAGAAGTGTTGGCACGTCGCTTTGGATTGCTTGGTTATGAGCCATCGACTCTCGAAGAAGTGGGCAAAGAGA
TTGGTTTAACACGTGAGCGCGTGCGTCAGATCCAAGTTGAAGGGCTACGCAGATTGCGTGAAATCTTAGTCAAACAGGGA
CTTAACATGGAAAACCTGTTTGATGTCGATATGGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (93-162)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (55-88)

• Sigma-70, region 4 (Sigma70_r4) (261-314)

• Sigma-70 region 3 (Sigma70_r3) (173-246)

3D structure

• AlphaFold DB: A0A0F2HWA1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	82.335	100	0.828