Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I4Q40_RS12450 Genome accession   NZ_CP065211
Coordinates   2559864..2560910 (-) Length   348 a.a.
NCBI ID   WP_156272020.1    Uniprot ID   -
Organism   Enterococcus lactis strain KCTC 21015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2554864..2565910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I4Q40_RS12440 (I4Q40_12440) proC 2557001..2557804 (+) 804 WP_002315882.1 pyrroline-5-carboxylate reductase -
  I4Q40_RS12445 (I4Q40_12445) rny 2557886..2559442 (-) 1557 WP_002287336.1 ribonuclease Y -
  I4Q40_RS12450 (I4Q40_12450) recA 2559864..2560910 (-) 1047 WP_156272020.1 recombinase RecA Machinery gene
  I4Q40_RS12455 (I4Q40_12455) cinA 2561019..2562260 (-) 1242 WP_002315881.1 competence/damage-inducible protein A Machinery gene
  I4Q40_RS12460 (I4Q40_12460) pgsA 2562431..2563009 (-) 579 WP_002293081.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I4Q40_RS12465 (I4Q40_12465) - 2563218..2564141 (-) 924 WP_156272022.1 RodZ domain-containing protein -
  I4Q40_RS12470 (I4Q40_12470) yfmH 2564510..2565796 (-) 1287 WP_025477349.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37400.79 Da        Isoelectric Point: 4.8968

>NTDB_id=508117 I4Q40_RS12450 WP_156272020.1 2559864..2560910(-) (recA) [Enterococcus lactis strain KCTC 21015]
MADDRKAALDAALKKIEKSYGKGSIMKLGEKIDQQISTIPSGSLALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
EVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGD
SHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNR
TKIKVVKNKVAPPFKIAEVDIMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGRENAKIYMANHPEMMAEVSA
LVRAAYGIGEEVAVPEDTKGQEELPLEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=508117 I4Q40_RS12450 WP_156272020.1 2559864..2560910(-) (recA) [Enterococcus lactis strain KCTC 21015]
TTGGCAGATGATCGTAAAGCAGCCTTAGATGCTGCACTGAAAAAAATTGAAAAGAGCTATGGTAAAGGCTCTATTATGAA
ATTGGGCGAAAAAATCGACCAACAAATCTCTACAATTCCAAGTGGCTCTCTTGCGTTAGATGTCGCTTTAGGTGTCGGCG
GTTACCCCCGTGGACGTATCATCGAAGTATATGGACCTGAAAGTTCAGGTAAAACAACAGTGGCGCTACACGCTATTGCA
GAAGTACAAAAAAATGGCGGAACGGCCGCTTTCATTGATGCTGAGCATGCGTTAGATCCGCAATATGCACAAAAATTAGG
CGTGAATATCGATGAACTACTTCTTTCACAGCCTGACACAGGAGAACAAGGTCTGGAGATCGCTGATGCTTTAGTATCAA
GTGGGGCTGTAGATATCGTAGTAGTCGATTCAGTTGCTGCTTTAGTTCCACGAGCAGAAATCGACGGCGAAATGGGTGAC
TCACATGTCGGGTTACAAGCACGTTTGATGTCTCAAGCATTGCGTAAACTCTCTGGTTCGATCAACAAAACAAAAACAAT
CGCTATTTTCATCAACCAAATCCGTGAAAAAGTAGGCGTGATGTTTGGGAATCCAGAAATCACTCCTGGAGGACGCGCAT
TGAAATTCTACGCAACGATCCGTTTAGAAGTACGTCGTGCAGAACAATTGAAACAAGGAACAGATATTGTTGGTAACCGT
ACAAAGATCAAAGTCGTAAAAAACAAAGTAGCACCTCCTTTCAAAATCGCTGAAGTAGATATCATGTATGGTTTAGGGAT
CTCACAAGAAGGAGAACTTCTAGACATGGCAGTAGAAAAAGACATCGTTGATAAAAGCGGTGCTTGGTACTCTTATAAAG
AAGATCGGATTGGCCAAGGACGAGAAAATGCTAAAATCTATATGGCTAATCATCCTGAAATGATGGCAGAAGTTTCTGCT
CTAGTTAGAGCAGCTTATGGCATTGGTGAAGAAGTGGCTGTCCCAGAAGATACAAAAGGCCAAGAAGAATTACCTTTAGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

78.902

99.425

0.784
  recA Bacillus subtilis subsp. subtilis str. 168

79.692

93.391

0.744
  recA Streptococcus pneumoniae D39

69.516

100

0.701
  recA Streptococcus pneumoniae R6

69.516

100

0.701
  recA Streptococcus pneumoniae TIGR4

69.516

100

0.701
  recA Streptococcus pneumoniae Rx1

69.516

100

0.701
  recA Streptococcus mitis SK321

71.429

96.552

0.69
  recA Streptococcus mitis NCTC 12261

71.131

96.552

0.687
  recA Streptococcus pyogenes NZ131

70.091

95.115

0.667
  recA Streptococcus mutans UA159

66.859

99.713

0.667
  recA Lactococcus lactis subsp. cremoris KW2

67.781

94.54

0.641
  recA Neisseria gonorrhoeae strain FA1090

61.765

97.701

0.603
  recA Neisseria gonorrhoeae MS11

61.765

97.701

0.603
  recA Neisseria gonorrhoeae MS11

61.765

97.701

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.914

93.966

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.058

98.563

0.592
  recA Helicobacter pylori strain NCTC11637

57.759

100

0.578
  recA Helicobacter pylori 26695

57.759

100

0.578
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.92

92.816

0.575
  recA Acinetobacter baumannii D1279779

61.92

92.816

0.575
  recA Vibrio cholerae strain A1552

61.92

92.816

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.538

93.391

0.575
  recA Acinetobacter baylyi ADP1

61.61

92.816

0.572
  recA Ralstonia pseudosolanacearum GMI1000

63.259

89.943

0.569
  recA Pseudomonas stutzeri DSM 10701

60.802

93.103

0.566
  recA Glaesserella parasuis strain SC1401

61.059

92.241

0.563