Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   I4Q40_RS12455 Genome accession   NZ_CP065211
Coordinates   2561019..2562260 (-) Length   413 a.a.
NCBI ID   WP_002315881.1    Uniprot ID   A0A7W1XF97
Organism   Enterococcus lactis strain KCTC 21015     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2556019..2567260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I4Q40_RS12440 (I4Q40_12440) proC 2557001..2557804 (+) 804 WP_002315882.1 pyrroline-5-carboxylate reductase -
  I4Q40_RS12445 (I4Q40_12445) rny 2557886..2559442 (-) 1557 WP_002287336.1 ribonuclease Y -
  I4Q40_RS12450 (I4Q40_12450) recA 2559864..2560910 (-) 1047 WP_156272020.1 recombinase RecA Machinery gene
  I4Q40_RS12455 (I4Q40_12455) cinA 2561019..2562260 (-) 1242 WP_002315881.1 competence/damage-inducible protein A Machinery gene
  I4Q40_RS12460 (I4Q40_12460) pgsA 2562431..2563009 (-) 579 WP_002293081.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I4Q40_RS12465 (I4Q40_12465) - 2563218..2564141 (-) 924 WP_156272022.1 RodZ domain-containing protein -
  I4Q40_RS12470 (I4Q40_12470) yfmH 2564510..2565796 (-) 1287 WP_025477349.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  I4Q40_RS12475 (I4Q40_12475) yfmF 2565789..2567057 (-) 1269 WP_002315878.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45375.88 Da        Isoelectric Point: 4.9300

>NTDB_id=508118 I4Q40_RS12455 WP_002315881.1 2561019..2562260(-) (cinA) [Enterococcus lactis strain KCTC 21015]
MKAEIIAVGTELLLGQVVNTNATFLSEQLADLGIEVYYQTVVGDNQQRLEELIALAETRSELILLCGGLGPTEDDLTKEA
TAAHLGKSLIQNTEGYKKLLAYFETTHRKMTKNNLQQSQIIEGGVPLPNRTGLALGTFYQTDTHAYILLPGPPNELKPMF
VEQVRPLLEERFPSEEKLISKVLRFYGIGESRLVTELKDLIETQINPTIAPYAKPNEVTLRLTVKTKDVQAGNQALLALE
EKIQERVGEYFYGYGDDNSLAKVVVELLKANKQTVTAAESLTAGAFQAALGDIAGVSDVFPGGFVTYSLQTKAGFLEIDP
ELLAKYGTVSKECVEQMAIQAREIARTDYSVAFTGVAGPDTLEGHPAGTVWIAISSKDGVVSEKYHFARDRAAIRYNAVM
QGFDLLRKQLLRK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=508118 I4Q40_RS12455 WP_002315881.1 2561019..2562260(-) (cinA) [Enterococcus lactis strain KCTC 21015]
ATGAAAGCAGAAATAATAGCTGTCGGAACAGAACTTTTACTAGGACAAGTCGTGAATACGAATGCCACTTTCTTGTCAGA
ACAGCTAGCTGATCTAGGTATCGAAGTTTATTATCAGACAGTCGTAGGAGATAATCAGCAGCGTTTAGAAGAGTTGATTG
CTCTAGCTGAAACAAGAAGTGAACTCATACTCTTATGTGGCGGATTAGGGCCGACAGAAGATGACCTGACAAAAGAAGCA
ACTGCGGCTCACCTCGGTAAGTCTCTCATACAAAATACGGAAGGATACAAAAAATTATTGGCATATTTTGAAACAACCCA
TCGAAAAATGACCAAAAACAATCTGCAACAGTCTCAAATCATCGAAGGCGGGGTTCCTCTACCAAATCGTACAGGGCTTG
CTTTAGGGACTTTTTATCAAACAGATACACATGCATATATCCTTCTTCCCGGTCCGCCTAATGAGTTGAAACCAATGTTT
GTGGAACAAGTACGTCCATTACTAGAGGAACGTTTTCCTTCTGAAGAAAAACTGATTTCTAAAGTTTTGCGCTTTTATGG
GATTGGTGAATCGCGACTGGTCACTGAACTAAAAGATCTGATCGAGACACAGATCAATCCAACGATCGCTCCTTATGCCA
AACCAAATGAAGTGACATTGCGTCTAACAGTGAAAACAAAGGATGTTCAGGCAGGAAATCAAGCTCTTTTAGCATTGGAA
GAAAAGATTCAAGAACGAGTAGGAGAATATTTTTATGGATATGGCGATGATAATTCGTTAGCAAAAGTCGTAGTGGAACT
GCTGAAAGCAAACAAGCAGACTGTAACAGCGGCGGAAAGCTTGACAGCCGGTGCCTTCCAAGCCGCATTGGGCGATATTG
CTGGTGTATCTGATGTATTTCCAGGCGGCTTCGTTACCTACTCGCTCCAAACAAAAGCTGGTTTTCTGGAGATTGATCCG
GAGCTATTAGCAAAATATGGAACAGTCAGCAAAGAATGTGTGGAGCAGATGGCCATTCAAGCACGTGAGATAGCAAGAAC
AGATTACAGTGTAGCTTTCACCGGAGTGGCTGGACCGGACACATTAGAAGGTCACCCTGCAGGAACAGTATGGATCGCAA
TTTCATCTAAAGATGGCGTGGTTTCAGAAAAATATCACTTTGCCAGAGACCGTGCGGCTATCAGATATAATGCGGTTATG
CAAGGATTTGATCTTTTGAGAAAACAGCTTTTAAGAAAATGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W1XF97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

51.429

100

0.523
  cinA Streptococcus pneumoniae TIGR4

51.19

100

0.521
  cinA Streptococcus mutans UA159

51.566

100

0.518
  cinA Streptococcus pneumoniae D39

50.952

100

0.518
  cinA Streptococcus pneumoniae R6

50.952

100

0.518
  cinA Streptococcus pneumoniae Rx1

50.952

100

0.518
  cinA Streptococcus mitis NCTC 12261

50.952

100

0.518
  cinA Bacillus subtilis subsp. subtilis str. 168

47.573

99.758

0.475
  cinA Streptococcus suis isolate S10

41.546

100

0.416