Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ITG08_RS03360 Genome accession   NZ_CP065206
Coordinates   756455..757495 (-) Length   346 a.a.
NCBI ID   WP_010435812.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain ED653     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 751455..762495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG08_RS03345 (ITG08_03335) csrA 751852..752049 (-) 198 WP_009847619.1 carbon storage regulator CsrA -
  ITG08_RS03350 (ITG08_03340) - 752142..753323 (-) 1182 WP_010435816.1 aspartate kinase -
  ITG08_RS03355 (ITG08_03345) alaS 753544..756126 (-) 2583 WP_010435813.1 alanine--tRNA ligase -
  ITG08_RS03360 (ITG08_03350) recA 756455..757495 (-) 1041 WP_010435812.1 recombinase RecA Machinery gene
  ITG08_RS03365 (ITG08_03355) pncC 757635..758129 (-) 495 WP_016768194.1 nicotinamide-nucleotide amidase -
  ITG08_RS03370 (ITG08_03360) mutS 758253..760814 (+) 2562 WP_016768193.1 DNA mismatch repair protein MutS -
  ITG08_RS03375 (ITG08_03365) rpoS 760924..761904 (-) 981 WP_010435803.1 RNA polymerase sigma factor RpoS Regulator

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37229.75 Da        Isoelectric Point: 4.9843

>NTDB_id=508001 ITG08_RS03360 WP_010435812.1 756455..757495(-) (recA) [Vibrio cyclitrophicus strain ED653]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA
AAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNE
TRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKLVEKAGAWYSYKGDKIGQGKANAGKYLRENPEVALEIDT
KLRELLLTPAVLEEKGAEKEEESEEL

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=508001 ITG08_RS03360 WP_010435812.1 756455..757495(-) (recA) [Vibrio cyclitrophicus strain ED653]
ATGGACGAGAATAAACAAAAAGCGTTAGCCGCAGCCCTTGGTCAGATTGAAAAACAATTTGGTAAAGGTTCGATCATGCG
TCTTGGTGACAACCGCACAATGGACGTAGAAACTATTTCTACAGGTTCTCTATCTCTAGATATCGCACTAGGTGCTGGTG
GCCTTCCAATGGGTCGTATCGTTGAAGTTTACGGCCCAGAATCATCAGGTAAAACAACGTTAACGCTTGAGCTTATTGCT
GCAGCACAGAAAGTAGGTAAAACGTGTGCATTCGTTGATGCGGAGCACGCACTTGACCCTATTTACGCTCAGAAGCTTGG
TGTTGATATCGACGCGCTTCTTGTTTCTCAACCTGATACGGGTGAGCAAGCATTAGAAATCTGTGACGCTCTAGCTCGTT
CAGGTGCTATCGACGTTCTTGTTATTGACTCAGTAGCTGCACTGACACCTAAAGCGGAAATTGAAGGCGAAATGGGCGAT
AGCCACATGGGTCTTCAAGCTCGTATGCTTTCTCAAGCAATGCGTAAGCTAACAGGTAACCTTAAGCAGTCTAATTGTAT
GGCTATCTTCATTAACCAAATTCGTATGAAGATTGGTGTGATGTTCGGTAATCCAGAAACAACAACTGGTGGTAATGCGC
TTAAGTTCTACGCATCTGTTCGTCTTGATATTCGCCGTACAGGTGCGATTAAGGATGGTGATGAAGTTGTTGGTAATGAA
ACGCGTATCAAGGTTGTTAAGAACAAGATTGCTGCACCATTCAAACAAGCTGAAACTCAAATTCTTTATGGCAAAGGCTT
CAACCGTGAAGGCGAGCTTATCGACCTAGGTGTTAAGAATAAGCTAGTAGAAAAAGCAGGCGCTTGGTACAGCTACAAGG
GCGACAAGATCGGTCAAGGTAAAGCTAACGCTGGTAAATACCTACGTGAAAACCCAGAGGTTGCTCTTGAGATCGATACT
AAACTTCGTGAGTTGTTATTAACTCCTGCTGTTCTTGAAGAGAAGGGCGCAGAGAAAGAAGAAGAAAGCGAAGAGCTATA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

89.97

95.087

0.855
  recA Vibrio cholerae O1 biovar El Tor strain E7946

89.97

95.087

0.855
  recA Pseudomonas stutzeri DSM 10701

76.133

95.665

0.728
  recA Acinetobacter baumannii D1279779

72.254

100

0.723
  recA Acinetobacter baylyi ADP1

71.676

100

0.717
  recA Neisseria gonorrhoeae MS11

66.954

100

0.673
  recA Neisseria gonorrhoeae MS11

66.954

100

0.673
  recA Neisseria gonorrhoeae strain FA1090

66.954

100

0.673
  recA Glaesserella parasuis strain SC1401

67.442

99.422

0.671
  recA Ralstonia pseudosolanacearum GMI1000

71.429

91.04

0.65
  recA Streptococcus mutans UA159

58.453

100

0.59
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

92.197

0.587
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

92.775

0.584
  recA Streptococcus pneumoniae D39

61.92

93.353

0.578
  recA Streptococcus mitis SK321

61.92

93.353

0.578
  recA Streptococcus pneumoniae Rx1

61.92

93.353

0.578
  recA Streptococcus pneumoniae R6

61.92

93.353

0.578
  recA Streptococcus pneumoniae TIGR4

61.92

93.353

0.578
  recA Helicobacter pylori strain NCTC11637

61.538

93.931

0.578
  recA Helicobacter pylori 26695

61.231

93.931

0.575
  recA Streptococcus mitis NCTC 12261

61.61

93.353

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

58.529

98.266

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.819

95.665

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

92.775

0.569
  recA Streptococcus pyogenes NZ131

60.308

93.931

0.566
  recA Lactococcus lactis subsp. cremoris KW2

59.443

93.353

0.555