Detailed information NTG0508003

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ITG08_RS03375
• Genome accession: NZ_CP065206
• Coordinates: 760924..761904 (-)
• Length: 326 a.a.
• NCBI ID: WP_010435803.1
• Uniprot ID: A0AAN0N9Q1
• Organism: Vibrio cyclitrophicus strain ED653
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 755924..766904

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ITG08_RS03360 (ITG08_03350)	recA	756455..757495 (-)	1041	WP_010435812.1	recombinase RecA	Machinery gene
ITG08_RS03365 (ITG08_03355)	pncC	757635..758129 (-)	495	WP_016768194.1	nicotinamide-nucleotide amidase	-
ITG08_RS03370 (ITG08_03360)	mutS	758253..760814 (+)	2562	WP_016768193.1	DNA mismatch repair protein MutS	-
ITG08_RS03375 (ITG08_03365)	rpoS	760924..761904 (-)	981	WP_010435803.1	RNA polymerase sigma factor RpoS	Regulator
ITG08_RS03380 (ITG08_03370)	nlpD	762003..762935 (-)	933	WP_016768192.1	murein hydrolase activator NlpD	-
ITG08_RS03385 (ITG08_03375)	-	762971..763597 (-)	627	WP_010435798.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ITG08_RS03390 (ITG08_03380)	surE	763598..764341 (-)	744	WP_010435796.1	5'/3'-nucleotidase SurE	-
ITG08_RS03395 (ITG08_03385)	truD	764417..765463 (-)	1047	WP_010435794.1	tRNA pseudouridine(13) synthase TruD	-
ITG08_RS03400 (ITG08_03390)	ispF	765486..765965 (-)	480	WP_016783764.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ITG08_RS03405 (ITG08_03395)	ispD	765968..766669 (-)	702	WP_010435790.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37267.52 Da
• Isoelectric Point: 5.2707

>NTDB_id=508003 ITG08_RS03375 WP_010435803.1 760924..761904(-) (rpoS) [Vibrio cyclitrophicus strain ED653]
MSISNAVTKEEFDLNQVTTESETLGKAKRTVTKKTEAKEEAEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIATKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREICLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=508003 ITG08_RS03375 WP_010435803.1 760924..761904(-) (rpoS) [Vibrio cyclitrophicus strain ED653]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGTAACCACGGAATCGGAAACACTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGCTGAAGTTACGTCTAAAAGTTTAGATGCTACTCAACTCT
ACTTAGGCGAAATTGGTTTCTCACCACTACTAACCGCTGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCGGCTCGCAAACGCATGATTGAAAGTAACCTGCGTTTGGTGGTTAAAATATCTCGTCGTTATAGCAACCGTGGTTT
GGCACTTCTCGATCTAATTGAAGAAGGCAACCTAGGCTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAGCGAGGTTTCC
GCTTTTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCTTTAATGAATCAGACTCGCACCATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACAGCAAGAGAGTTATCACAAAAGCTTGACCATGAACCAAC
GGCTGAAGAAATTGCTACTAAGCTAGACAAGCCAGTTGGTGATGTGAGCAAGATGCTTCGTTTAAACGAGCGAGTGAGCT
CCGTTGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCGGACATCAACAATTCCGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTAGATGAGCTGAACCCGAAACAGAAAGAGGTGCT
TGCACGTCGCTTTGGACTACTTGGCTATGAACCGTCAACGTTAGAAGAAGTAGGCCGTGAAATCTGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGAGAGATTCTGATCAAGCAAGGTCTGAACATGGAAAACCTG
TTTAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.437	100	0.834