Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I2433_RS09995 Genome accession   NZ_CP065056
Coordinates   2064515..2065651 (-) Length   378 a.a.
NCBI ID   WP_042671444.1    Uniprot ID   A0A380JUC1
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2059515..2070651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2433_RS09970 (JDBNIEOD_02005) - 2060559..2062094 (-) 1536 WP_231151264.1 DUF2079 domain-containing protein -
  I2433_RS09975 (JDBNIEOD_02006) - 2062635..2062934 (-) 300 WP_012516437.1 DUF1292 domain-containing protein -
  I2433_RS09980 (JDBNIEOD_02007) ruvX 2062944..2063363 (-) 420 WP_111678736.1 Holliday junction resolvase RuvX -
  I2433_RS09985 (JDBNIEOD_02008) - 2063360..2063629 (-) 270 WP_012516439.1 IreB family regulatory phosphoprotein -
  I2433_RS09990 (JDBNIEOD_02009) spx 2063742..2064140 (-) 399 WP_012516440.1 transcriptional regulator Spx -
  I2433_RS09995 (JDBNIEOD_02010) recA 2064515..2065651 (-) 1137 WP_042671444.1 recombinase RecA Machinery gene
  I2433_RS10000 (JDBNIEOD_02011) cinA 2065745..2067016 (-) 1272 WP_206152251.1 competence/damage-inducible protein A Machinery gene
  I2433_RS10005 (JDBNIEOD_02012) - 2067702..2067992 (-) 291 WP_012516443.1 hypothetical protein -
  I2433_RS10010 (JDBNIEOD_02013) - 2067986..2068558 (-) 573 WP_111678741.1 phospholipase -
  I2433_RS10015 (JDBNIEOD_02014) - 2068855..2069700 (+) 846 WP_012516446.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 40573.22 Da        Isoelectric Point: 5.0444

>NTDB_id=506393 I2433_RS09995 WP_042671444.1 2064515..2065651(-) (recA) [Streptococcus equi subsp. zooepidemicus strain SEZ14]
MAKKVKKNEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNINELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
TTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELIKIASDLDIIQKAGAWFSYNGEKIGQGSE
NAKRYLADHPELFDEIDHKVRVKFGLLEDTEESAAVDPAAAKADELVLELDDAIEIED

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=506393 I2433_RS09995 WP_042671444.1 2064515..2065651(-) (recA) [Streptococcus equi subsp. zooepidemicus strain SEZ14]
TTGGCAAAAAAAGTTAAAAAAAATGAAGAAATCACCAAAAAATTTGGTGATGAACGTCGTAAAGCACTTGATGATGCGTT
AAAGAACATCGAAAAAGATTTTGGTAAGGGTGCGGTTATGCGCCTTGGTGAGCGTGCAGAGCAAAAGGTTCAGGTGATGA
GTTCAGGCAGTCTTGCTTTAGACATTGCGCTTGGATCAGGTGGCTATCCTAAAGGGCGTATTATTGAAATCTATGGACCA
GAGTCTTCTGGTAAAACAACAGTTGCCCTGCATGCAGTAGCGCAGGCTCAAAAAGAAGGTGGTATTGCAGCCTTCATTGA
TGCGGAGCATGCCTTGGACCCTGCTTATGCTGCGGCGCTGGGTGTTAATATTAATGAGCTGCTTTTGTCACAGCCGGATT
CTGGTGAGCAAGGACTTGAGATAGCAGGTAAACTGATTGATTCTGGTGCTGTTGATTTGGTTGTTGTCGACTCTGTTGCA
GCTCTAGTGCCTCGTGCTGAGATTGATGGTGATATTGGTGATAACCATGTTGGTCTGCAGGCTCGTATGATGAGTCAGGC
GATGCGTAAGCTTTCAGCCTCAATCAATAAAACCAAGACAATTGCTATCTTTATTAACCAGCTACGTGAAAAGGTAGGGG
TTATGTTTGGTAATCCAGAGACGACACCAGGTGGTCGTGCTTTGAAATTCTATGCTTCTGTCCGTCTAGATGTTCGTGGA
ACAACACAAATAAAAGGAACTGGAGATCAAAAAGACAGCAGTATAGGTAAGGAAACTAAGATTAAGGTTGTTAAGAATAA
GGTTGCTCCACCGTTTAAGGTGGCTGAGGTTGAAATCATGTATGGAGAAGGCATCTCACGTACAGGTGAGCTGATCAAAA
TTGCTTCAGATTTAGACATTATTCAAAAGGCTGGTGCTTGGTTCTCCTACAACGGTGAAAAAATTGGTCAGGGCTCTGAA
AATGCTAAGAGATATTTGGCTGACCACCCAGAGCTATTTGATGAGATTGATCATAAGGTGCGTGTTAAATTTGGCTTGCT
TGAAGATACCGAGGAAAGTGCAGCTGTAGATCCAGCTGCAGCCAAAGCAGATGAGCTGGTTTTAGAGCTAGACGATGCCA
TTGAAATTGAGGATTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380JUC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

93.651

100

0.937
  recA Streptococcus mutans UA159

88.251

100

0.894
  recA Streptococcus mitis NCTC 12261

85.827

100

0.865
  recA Streptococcus pneumoniae TIGR4

84.675

100

0.862
  recA Streptococcus pneumoniae Rx1

84.675

100

0.862
  recA Streptococcus pneumoniae D39

84.675

100

0.862
  recA Streptococcus pneumoniae R6

84.675

100

0.862
  recA Streptococcus mitis SK321

85.302

100

0.86
  recA Lactococcus lactis subsp. cremoris KW2

78.187

93.386

0.73
  recA Latilactobacillus sakei subsp. sakei 23K

70.238

88.889

0.624
  recA Bacillus subtilis subsp. subtilis str. 168

68.085

87.037

0.593
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.651

87.831

0.55
  recA Neisseria gonorrhoeae strain FA1090

61.934

87.566

0.542
  recA Neisseria gonorrhoeae MS11

61.934

87.566

0.542
  recA Neisseria gonorrhoeae MS11

61.934

87.566

0.542
  recA Acinetobacter baylyi ADP1

58.571

92.593

0.542
  recA Glaesserella parasuis strain SC1401

59.412

89.947

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.92

85.45

0.529
  recA Acinetobacter baumannii D1279779

60.923

85.979

0.524
  recA Vibrio cholerae strain A1552

60.615

85.979

0.521
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.615

85.979

0.521
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.215

87.566

0.519
  recA Pseudomonas stutzeri DSM 10701

56.322

92.063

0.519
  recA Helicobacter pylori 26695

58.485

87.302

0.511
  recA Helicobacter pylori strain NCTC11637

58.485

87.302

0.511
  recA Ralstonia pseudosolanacearum GMI1000

59.621

83.862

0.5