Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   I2433_RS10000 Genome accession   NZ_CP065056
Coordinates   2065745..2067016 (-) Length   423 a.a.
NCBI ID   WP_206152251.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ14     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 2060745..2072016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2433_RS09975 (JDBNIEOD_02006) - 2062635..2062934 (-) 300 WP_012516437.1 DUF1292 domain-containing protein -
  I2433_RS09980 (JDBNIEOD_02007) ruvX 2062944..2063363 (-) 420 WP_111678736.1 Holliday junction resolvase RuvX -
  I2433_RS09985 (JDBNIEOD_02008) - 2063360..2063629 (-) 270 WP_012516439.1 IreB family regulatory phosphoprotein -
  I2433_RS09990 (JDBNIEOD_02009) spx 2063742..2064140 (-) 399 WP_012516440.1 transcriptional regulator Spx -
  I2433_RS09995 (JDBNIEOD_02010) recA 2064515..2065651 (-) 1137 WP_042671444.1 recombinase RecA Machinery gene
  I2433_RS10000 (JDBNIEOD_02011) cinA 2065745..2067016 (-) 1272 WP_206152251.1 competence/damage-inducible protein A Machinery gene
  I2433_RS10005 (JDBNIEOD_02012) - 2067702..2067992 (-) 291 WP_012516443.1 hypothetical protein -
  I2433_RS10010 (JDBNIEOD_02013) - 2067986..2068558 (-) 573 WP_111678741.1 phospholipase -
  I2433_RS10015 (JDBNIEOD_02014) - 2068855..2069700 (+) 846 WP_012516446.1 helix-turn-helix transcriptional regulator -
  I2433_RS10020 (JDBNIEOD_02015) - 2070144..2070695 (-) 552 WP_111678743.1 DNA-3-methyladenine glycosylase I -
  I2433_RS10025 (JDBNIEOD_02016) ruvA 2070705..2071301 (-) 597 WP_037580030.1 Holliday junction branch migration protein RuvA -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 45736.45 Da        Isoelectric Point: 5.8304

>NTDB_id=506394 I2433_RS10000 WP_206152251.1 2065745..2067016(-) (cinA) [Streptococcus equi subsp. zooepidemicus strain SEZ14]
MKAELIAVGTEILTGQIVNTNAQFLSEKMAELGIDVYFQTAVGDNEERLLSVIDIASQRSDLVILCGGLGPTDDDLTKQT
LAKYLGKALVFDEQAGQKLDAFFAHRKQAVRTPNNQRQAQLIEGSIALQNQTGLAVGGLIAVDRVTYVVLPGPPSELKPM
VKNELVPLLSASHASLYSRVLRFFGIGESQLVTALEDLIKHQTDPTIAPYAKTGEVTLRLSTKADNQALADERLDRLEAQ
LLSIKTVDNQPLRRLLYGYGEDNSLARETFELLKRSGKTITAAESLTAGLFQAQLTDFAGASQVFNGGFITYSIEEKARM
LGIPLGELQRHGVVSSFTAEQMAAQARCLTNSDIGIGLTGVAGPEALEGQPAGTVFIGLATKNKVESLKVVIGGRSRLDV
RYIAALYAFNMVRKTLLKSENLL

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=506394 I2433_RS10000 WP_206152251.1 2065745..2067016(-) (cinA) [Streptococcus equi subsp. zooepidemicus strain SEZ14]
ATGAAAGCTGAACTCATTGCGGTGGGAACCGAGATTCTGACTGGTCAGATTGTAAATACCAATGCTCAATTTTTATCAGA
AAAAATGGCAGAGCTTGGTATTGATGTTTATTTTCAAACAGCTGTAGGAGATAATGAAGAGCGTTTGCTTTCTGTTATTG
ATATTGCTAGCCAGCGAAGTGATTTAGTGATTTTATGTGGTGGTCTTGGTCCAACAGATGATGATCTAACGAAGCAGACC
TTAGCTAAGTATCTAGGAAAAGCTTTGGTCTTTGATGAGCAGGCAGGTCAAAAATTAGATGCTTTTTTTGCACATCGTAA
GCAGGCTGTTAGGACACCAAATAACCAACGTCAGGCGCAGCTGATTGAAGGCTCTATTGCTTTGCAAAATCAAACAGGAC
TTGCAGTAGGTGGGTTAATAGCTGTAGATAGGGTAACCTATGTTGTCTTACCAGGGCCTCCAAGTGAGCTAAAGCCTATG
GTAAAAAATGAGCTGGTGCCCCTTCTTTCAGCTAGTCATGCCAGTCTATATTCAAGAGTGCTGCGTTTTTTTGGCATTGG
TGAAAGTCAACTGGTGACTGCTCTGGAGGATTTGATTAAGCATCAAACAGATCCTACCATTGCTCCTTATGCAAAGACCG
GCGAGGTAACACTGCGACTATCCACAAAGGCTGACAACCAAGCATTAGCTGATGAAAGGCTGGATCGACTAGAGGCGCAG
CTCTTATCCATAAAAACTGTAGATAATCAACCCTTACGGCGTTTGCTTTATGGCTATGGGGAGGATAATTCCTTGGCGCG
TGAGACCTTTGAGCTATTGAAGCGAAGTGGTAAGACGATAACAGCAGCTGAAAGCTTAACAGCAGGACTGTTTCAAGCTC
AGTTAACTGATTTTGCGGGAGCTTCACAGGTGTTTAACGGTGGCTTTATCACCTACAGCATTGAAGAAAAAGCAAGAATG
CTTGGCATTCCATTGGGTGAGCTACAAAGGCATGGTGTTGTGAGCTCTTTTACAGCTGAGCAAATGGCTGCACAGGCACG
CTGCTTGACCAATTCAGATATCGGTATTGGTCTAACAGGTGTTGCTGGTCCAGAGGCACTCGAGGGACAGCCAGCAGGAA
CAGTTTTCATTGGCCTTGCCACTAAGAATAAGGTAGAATCTCTTAAAGTTGTTATAGGAGGCCGTAGCCGTTTGGACGTG
CGGTATATTGCTGCCCTATATGCTTTTAATATGGTTCGTAAAACTTTATTAAAATCAGAGAATTTGCTATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(263-416)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

70.922

100

0.709
  cinA Streptococcus mitis NCTC 12261

70.504

98.582

0.695
  cinA Streptococcus mitis SK321

70.264

98.582

0.693
  cinA Streptococcus pneumoniae TIGR4

70.024

98.582

0.69
  cinA Streptococcus pneumoniae Rx1

70.024

98.582

0.69
  cinA Streptococcus pneumoniae R6

70.024

98.582

0.69
  cinA Streptococcus pneumoniae D39

69.784

98.582

0.688
  cinA Streptococcus suis isolate S10

54.177

99.054

0.537
  cinA Bacillus subtilis subsp. subtilis str. 168

47.847

98.818

0.473