Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MY9_RS09265 Genome accession   NC_017743
Coordinates   1811278..1812324 (+) Length   348 a.a.
NCBI ID   WP_014664021.1    Uniprot ID   -
Organism   Bacillus sp. JS     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1806278..1817324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY9_RS09235 (MY9_1834) efpI 1806286..1807014 (+) 729 WP_041521338.1 EF-P-5 aminopentanone reductase -
  MY9_RS09240 (MY9_1835) - 1807095..1807352 (+) 258 WP_003245199.1 DUF3243 domain-containing protein -
  MY9_RS09245 (MY9_1836) - 1807482..1808273 (+) 792 WP_040083145.1 YmfK family protein -
  MY9_RS09250 (MY9_1837) rodZ 1808340..1809206 (+) 867 WP_237711718.1 cell shape determination protein RodZ -
  MY9_RS09255 (MY9_1838) pgsA 1809256..1809837 (+) 582 WP_014664019.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MY9_RS09260 (MY9_1839) cinA 1809855..1811105 (+) 1251 WP_014664020.1 competence/damage-inducible protein A Machinery gene
  MY9_RS09265 (MY9_1840) recA 1811278..1812324 (+) 1047 WP_014664021.1 recombinase RecA Machinery gene
  MY9_RS09270 (MY9_1841) - 1812493..1813668 (+) 1176 WP_014664022.1 serine hydrolase domain-containing protein -
  MY9_RS09275 (MY9_1842) rny 1813945..1815507 (+) 1563 WP_003221010.1 ribonuclease Y -
  MY9_RS09280 (MY9_1843) ymdB 1815577..1816371 (+) 795 WP_014664023.1 2',3'-cyclic-nucleotide 2'-phosphodiesterase -
  MY9_RS09285 (MY9_1844) spoVS 1816570..1816830 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38087.26 Da        Isoelectric Point: 4.7315

>NTDB_id=50606 MY9_RS09265 WP_014664021.1 1811278..1812324(+) (recA) [Bacillus sp. JS]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNNGVVQQQVEETQEELEFEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=50606 MY9_RS09265 WP_014664021.1 1811278..1812324(+) (recA) [Bacillus sp. JS]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTCGGCAAAGGTTCCATTATGAAACT
GGGAGAAAAGACAGATACAAGAATTTCTACTGTCCCAAGTGGCTCCCTCGCTCTTGATACGGCATTGGGAATTGGCGGAT
ATCCGCGCGGACGGATTATTGAAGTATACGGTCCTGAAAGCTCAGGTAAAACAACTGTGGCGCTTCATGCAATTGCTGAA
GTACAGCAGCAGGGCGGACAAGCCGCGTTTATCGATGCGGAGCATGCGTTAGATCCGGTATACGCGCAAAAGCTTGGTGT
TAACATTGAAGAGCTTTTACTGTCTCAGCCTGACACAGGCGAGCAGGCGCTTGAAATTGCGGAAGCATTGGTTCGAAGCG
GAGCAGTTGACATTGTTGTTGTCGACTCTGTAGCTGCTCTCGTTCCGAAAGCGGAAATTGAAGGGGACATGGGGGATTCG
CATGTCGGTCTACAAGCACGCTTAATGTCTCAAGCGCTTCGTAAGCTTTCAGGGGCCATTAACAAATCGAAGACAATCGC
GATTTTCATTAACCAAATTCGTGAAAAAGTCGGCGTTATGTTCGGGAACCCGGAAACAACTCCTGGCGGCCGTGCACTGA
AATTTTATTCTTCCGTGCGTCTAGAAGTGCGCCGTGCTGAACAGCTGAAACAAGGCAATGACGTAATGGGGAACAAAACG
AAAATCAAAGTCGTGAAAAACAAGGTGGCTCCGCCGTTCCGTACAGCCGAGGTTGACATTATGTACGGAGAAGGCATTTC
AAAAGAAGGAGAAATCATTGATCTAGGAACTGAACTTGATATCGTGCAAAAAAGCGGTTCATGGTACTCTTATGAAGAAG
AGCGTCTTGGCCAAGGCCGTGAAAATGCAAAACAATTCCTGAAAGAAAATAAAGATATCATGCTGATGATCCAGGAGCAG
ATTCGCGAACATTACGGCTTGGATAATAACGGAGTAGTGCAGCAGCAAGTTGAAGAGACACAAGAAGAACTCGAATTTGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

99.713

100

0.997
  recA Latilactobacillus sakei subsp. sakei 23K

72.727

97.989

0.713
  recA Streptococcus pneumoniae D39

66.477

100

0.672
  recA Streptococcus pneumoniae R6

66.477

100

0.672
  recA Streptococcus pneumoniae TIGR4

66.477

100

0.672
  recA Streptococcus pneumoniae Rx1

66.477

100

0.672
  recA Streptococcus mutans UA159

65.903

100

0.661
  recA Streptococcus mitis NCTC 12261

68.788

94.828

0.652
  recA Streptococcus mitis SK321

68.485

94.828

0.649
  recA Streptococcus pyogenes NZ131

67.683

94.253

0.638
  recA Neisseria gonorrhoeae strain FA1090

63.584

99.425

0.632
  recA Neisseria gonorrhoeae MS11

63.584

99.425

0.632
  recA Neisseria gonorrhoeae MS11

63.584

99.425

0.632
  recA Lactococcus lactis subsp. cremoris KW2

65.758

94.828

0.624
  recA Helicobacter pylori 26695

63.081

98.851

0.624
  recA Helicobacter pylori strain NCTC11637

63.081

98.851

0.624
  recA Ralstonia pseudosolanacearum GMI1000

64.832

93.966

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.914

93.966

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.914

93.966

0.601
  recA Glaesserella parasuis strain SC1401

60.29

99.138

0.598
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.465

98.851

0.598
  recA Vibrio cholerae strain A1552

60.465

98.851

0.598
  recA Acinetobacter baumannii D1279779

61.243

97.126

0.595
  recA Pseudomonas stutzeri DSM 10701

62.813

91.954

0.578
  recA Acinetobacter baylyi ADP1

62.422

92.529

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

92.816

0.563

Multiple sequence alignment